View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_33 (Length: 346)

Name: NF1412_low_33
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_low_33
NF1412_low_33
[»] chr1 (5 HSPs)
chr1 (18-330)||(14980529-14980851)
chr1 (204-329)||(30989582-30989707)
chr1 (79-202)||(24925908-24926031)
chr1 (204-298)||(30986388-30986483)
chr1 (204-237)||(14459647-14459680)
[»] chr2 (3 HSPs)
chr2 (79-200)||(22541472-22541593)
chr2 (99-184)||(27293717-27293802)
chr2 (226-320)||(22541675-22541770)
[»] chr4 (4 HSPs)
chr4 (89-197)||(5507237-5507345)
chr4 (79-201)||(18619547-18619670)
chr4 (79-183)||(20310774-20310879)
chr4 (204-262)||(5507139-5507197)
[»] chr8 (2 HSPs)
chr8 (79-184)||(34934785-34934890)
chr8 (79-184)||(16721131-16721236)
[»] chr5 (2 HSPs)
chr5 (100-196)||(26065942-26066037)
chr5 (79-202)||(21941616-21941739)
[»] chr6 (3 HSPs)
chr6 (99-194)||(17796318-17796412)
chr6 (274-329)||(22723863-22723918)
chr6 (101-200)||(22723655-22723753)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 14980529 - 14980851
Alignment:
Q  18 cttatctaacaaattgaggaaagtaattggtgaaagatatttctatcctttactttaagcctttg----------attacgtagtattttttgttttgag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||          |||||||||||||||||||||||||    
T  14980529 cttatctaacaaattgaggaaagtaattggtgaaagatatttctatccttcactt-aagcctttgattacttttgattacgtagtattttttgttttgag 14980627  T
Q  108 tgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaaaggttgacatgtttggagtcaagtaattt 207  Q
    | |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  14980628 taatgtcattagttattgtaaagcatcctctcaatttagatcacatactccgcacaagtgtgttgttagaaaggttgagatgtttggagtcaagtgattt 14980727  T
Q  208 aattcgattcatatattgcattcaagctcttgggtgattggct-cataaaaaattgctcaaaactaatttttaatgttttcaatctattcatgtatatgt 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980728 aattcgattcatatattgcattcaaactcttgggtgattggctaaaaaaaaaattgctcaaaactaatttttaatgttttcaatctattcatgtatatgt 14980827  T
Q  307 tgaatcgattcattgaagttctct 330  Q
    ||||||||||||| ||||||||||    
T  14980828 tgaatcgattcatcgaagttctct 14980851  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 204 - 329
Target Start/End: Complemental strand, 30989707 - 30989582
Alignment:
Q  204 atttaattcgattcatatattgcattcaagctcttgggtgattggctcataaaaaattgctcaaaactaatttttaatgttttcaatctattcatgtata 303  Q
    |||| |||||||||| |||||||||||||||||||| ||| ||||||||| |||||||| | ||||   |||||||||||||| |||  |||||||||||    
T  30989707 atttgattcgattcacatattgcattcaagctcttgtgtgtttggctcatgaaaaattgtttaaaaactatttttaatgttttgaattgattcatgtata 30989608  T
Q  304 tgttgaatcgattcattgaagttctc 329  Q
    | ||||||||||||||||||||||||    
T  30989607 ttttgaatcgattcattgaagttctc 30989582  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 24926031 - 24925908
Alignment:
Q  79 tttgattacgtagtattttttgttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaa 178  Q
    |||||||| ||| || ||| ||||||| ||||||||||||||| ||||| || | |   |||| ||||| |||||||||  ||||||| |||||||||||    
T  24926031 tttgattaagtaatagtttatgttttgtgtgatgtcattagtttttgtaaaggatctgttcaaattagaccacatactctgcacaagtatgttgttagaa 24925932  T
Q  179 aggttgacatgtttggagtcaagt 202  Q
    ||||||  |  |||||||||||||    
T  24925931 aggttgtgaaatttggagtcaagt 24925908  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 30986483 - 30986388
Alignment:
Q  204 atttaattcgattcatatattgcattcaagctcttgggtgattggctcataaaaaattgctcaaaa-ctaatttttaatgttttcaatctattcat 298  Q
    |||| |||||||||| || ||||| | |||||||||| || |||| |||| |||||||| |||||| ||| ||||||||||||| |||| ||||||    
T  30986483 atttgattcgattcacattttgcaatgaagctcttggctgtttggttcatgaaaaattgttcaaaaactattttttaatgttttgaatcgattcat 30986388  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 14459680 - 14459647
Alignment:
Q  204 atttaattcgattcatatattgcattcaagctct 237  Q
    |||| |||||||||||||||||||||||||||||    
T  14459680 atttgattcgattcatatattgcattcaagctct 14459647  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 22541472 - 22541593
Alignment:
Q  79 tttgattacgtagtattttttgttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaa 178  Q
    |||||||| |||||| ||| || |||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||||    
T  22541472 tttgattaagtagtagtttatgctttgagtgatgtcattcgtttttgtaaagcaccctttcaatttagatcacatactccgcacaagtgtgttcttagaa 22541571  T
Q  179 aggttgacatgtttggagtcaa 200  Q
    ||||||  | ||||||||||||    
T  22541572 aggttgtgaagtttggagtcaa 22541593  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 27293802 - 27293717
Alignment:
Q  99 tgttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaaaggttg 184  Q
    ||||| ||||||||||||||||  ||| | |||||| | |||||||||||||| |||||| ||||||||||||||||||| |||||    
T  27293802 tgtttcgagtgatgtcattagtatttgcaaagcaccatttcaatttagatcacgtactcctcacaagtgtgttgttagaagggttg 27293717  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 22541675 - 22541770
Alignment:
Q  226 cattcaagctcttgggtgattggctcataaaaaattgctcaaaactaatttt-taatgttttcaatctattcatgtatatgttgaatcgattcatt 320  Q
    |||||||||||| ||||| |||||| || |||||||| ||||||  |||||| || || ||| | || |||||||||||| ||||||||| |||||    
T  22541675 cattcaagctctcgggtgtttggcttatgaaaaattgttcaaaatcaattttctagtgatttgattcgattcatgtatattttgaatcgaatcatt 22541770  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 5507345 - 5507237
Alignment:
Q  89 tagtattttttgttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaaaggttgacat 188  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||  ||| ||||| |||||||||||||||  ||    
T  5507345 tagtattttttgttttgagtgatgccattagtttttgtaaagcaccctctcagtttagatcacatactcagcacgagtgtattgttagaaaggttgggat 5507246  T
Q  189 gtttggagt 197  Q
    | |||||||    
T  5507245 ggttggagt 5507237  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 18619670 - 18619547
Alignment:
Q  79 tttgattacgtagtattttttgttttgagtgatgtcattagttattgtag-agcaccctctcaatttagatcacatactccacacaagtgtgttgttaga 177  Q
    |||||||| |||||| ||| |||||||||||||||||||| || |||||  |||||||| ||| ||||||||||||||| | || ||||||||  |||||    
T  18619670 tttgattaagtagtagtttatgttttgagtgatgtcattattttttgtaatagcaccctttcagtttagatcacatacttcgcagaagtgtgtcattaga 18619571  T
Q  178 aaggttgacatgtttggagtcaag 201  Q
    |||||||  | |||| ||||||||    
T  18619570 aaggttgtgaagttttgagtcaag 18619547  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 20310879 - 20310774
Alignment:
Q  79 tttgattacgtagtattttttgttttgagtgatgtcattagttattgtaga-gcaccctctcaatttagatcacatactccacacaagtgtgttgttaga 177  Q
    |||||||| |||||| ||| |  ||| |||||||||||||||| || || | ||| ||| ||| ||||||||||||||||| |||||||||||||||| |    
T  20310879 tttgattaagtagtagtttataatttaagtgatgtcattagtttttttaaaagcatcctttcagtttagatcacatactccgcacaagtgtgttgttata 20310780  T
Q  178 aaggtt 183  Q
    ||||||    
T  20310779 aaggtt 20310774  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 5507197 - 5507139
Alignment:
Q  204 atttaattcgattcatatattgcattcaagctcttgggtgattggctcataaaaaattg 262  Q
    |||| |||||||||||||| ||||||||||||||||| || |||| |||||||||||||    
T  5507197 atttgattcgattcatataatgcattcaagctcttggatgtttggttcataaaaaattg 5507139  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 34934785 - 34934890
Alignment:
Q  79 tttgattacgtagtattttttgttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaa 178  Q
    |||||| | |||||||||| |||||||| ||||||| |||||| ||||| |||||||| ||| ||||||||||||||| ||||||| |||||||||||||    
T  34934785 tttgatgaagtagtattttatgttttgattgatgtcgttagtttttgtaaagcaccctttcagtttagatcacatactacacacaaatgtgttgttagaa 34934884  T
Q  179 aggttg 184  Q
    | ||||    
T  34934885 atgttg 34934890  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 16721131 - 16721236
Alignment:
Q  79 tttgattacgtagtattttttgttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaa 178  Q
    |||||||| |||||||||| | |||||| |||||||||||||| ||||| ||||||   | |||||| |||||||||| ||||||||||||| |||||||    
T  16721131 tttgattaagtagtattttatcttttgaatgatgtcattagtttttgtaaagcacctctttaatttatatcacatactacacacaagtgtgtggttagaa 16721230  T
Q  179 aggttg 184  Q
    | ||||    
T  16721231 atgttg 16721236  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 26065942 - 26066037
Alignment:
Q  100 gttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaaaggttgacatgtttggag 196  Q
    |||||||||||||||||||||| ||||| ||||| |  ||| ||||||||||||||||| | ||||||||||||||||||||| |  ||||||||||    
T  26065942 gttttgagtgatgtcattagtt-ttgtaaagcactcgttcagtttagatcacatactccgctcaagtgtgttgttagaaaggtcgtgatgtttggag 26066037  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 21941616 - 21941739
Alignment:
Q  79 tttgattacgtagtattttttgttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaa 178  Q
    |||||||| ||||||  || ||||||||||||||||||||||| ||||| |  |     ||| ||||||||||||||||  |||||||||| | ||||||    
T  21941616 tttgattaagtagtaacttatgttttgagtgatgtcattagtttttgtacaatatttgttcagtttagatcacatactctgcacaagtgtgatattagaa 21941715  T
Q  179 aggttgacatgtttggagtcaagt 202  Q
    ||||||  | ||||||| ||||||    
T  21941716 aggttgtgaagtttggaatcaagt 21941739  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 17796412 - 17796318
Alignment:
Q  99 tgttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaaaggttgacatgtttgg 194  Q
    ||||||||||||||||||||||| ||||| | |||| | ||| |||||||||||||||  || ||||||| |||||||||||||||  ||||||||    
T  17796412 tgttttgagtgatgtcattagtt-ttgtaaaacaccatttcagtttagatcacatactttactcaagtgtattgttagaaaggttgtgatgtttgg 17796318  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 22723863 - 22723918
Alignment:
Q  274 tttttaatgttttcaatctattcatgtatatgttgaatcgattcattgaagttctc 329  Q
    ||||||||||||| | || ||||||| |||||||||||||||||||| ||||||||    
T  22723863 tttttaatgttttgattcgattcatgcatatgttgaatcgattcattcaagttctc 22723918  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 22723655 - 22723753
Alignment:
Q  101 ttttgagtgatgtcattagttattgtagagcaccctctcaatttagatcacatactccacacaagtgtgttgttagaaaggttgacatgtttggagtcaa 200  Q
    |||| ||| |||||||||||  | ||| |||||||| ||| || | ||||||||||| |||||||| | |||||||||||||||  ||||||||| ||||    
T  22723655 tttttagtaatgtcattagtcttagtaaagcaccctttcagtt-acatcacatactctacacaagtttattgttagaaaggttgtgatgtttggaatcaa 22723753  T

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