View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_34 (Length: 345)
Name: NF1412_low_34
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_34 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 36746151 - 36746495
Alignment:
| Q |
1 |
tagggaaaagagagaatgatgaatggacagcagatgaaaaggcaagagtagccttcaaaaggtttgcaaagaagatggaagacatcgagnnnnnnntcga |
100 |
Q |
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| T |
36746151 |
tagggaaaagagagaatgatgaatggacagcagatgaaaaggcaagagtagccttcaaaaggtttgcaaagaagatggaagacatcgagaaaaaaattga |
36746250 |
T |
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| Q |
101 |
aagcagaaacaaagaaccagatttgcttaaccgaactggcccggttaagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcaga |
200 |
Q |
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| T |
36746251 |
aagcagaaacaaagaaccagatttgcttaaccgaactggcccggttaagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcaga |
36746350 |
T |
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| Q |
201 |
ggaattcccaatagtgtttctatctaaggatctctttaagctaccctacaagtattgttgctgcaactttcaataaaatacatagatgagactgatcttg |
300 |
Q |
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| T |
36746351 |
ggaattcccaatagtgtttctatctaaggatctctttaagctaccctacaagtattgttgctgcaactttcaataaaatacatagatgagactgatcttg |
36746450 |
T |
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| Q |
301 |
tctatgtacaagtatgtttgtttgttaatcaaatgttgtattttg |
345 |
Q |
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| T |
36746451 |
tctatgtacatatatgtttgtttgttaatcaaatgttgtattttg |
36746495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 29014396 - 29014439
Alignment:
| Q |
265 |
aactttcaataaaatacatagatgagactgatcttgtctatgta |
308 |
Q |
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| T |
29014396 |
aactttcaataaaatacatagatgagactgatgttgtctatgta |
29014439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 6361781 - 6361701
Alignment:
| Q |
147 |
aagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcagaggaattcccaatagtgtttctatctaa |
227 |
Q |
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| T |
6361781 |
aagatgccttacactctgctttatccttctagtgaggaaggattgacttgcagaggcattcccaacagtgtctctatctaa |
6361701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 6287358 - 6287290
Alignment:
| Q |
147 |
aagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcagaggaattcccaatagt |
215 |
Q |
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| T |
6287358 |
aagatgccatatactttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagt |
6287290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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