View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_35 (Length: 344)
Name: NF1412_low_35
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 2601017 - 2601339
Alignment:
| Q |
13 |
acaataacaatttccaatatgcaaaataaaaagcatagacattacaaaatatgtacatactatannnnnnnnnct--tctgacagacaaatgttagttat |
110 |
Q |
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| T |
2601017 |
acaataacaattttcaatatgcaaaacaaaaagcatag-cattacaaaatatgtacatactatattttttttcttcgtctgacagacaaatgttagttat |
2601115 |
T |
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| Q |
111 |
tagcttgtaagggggagggagaactgttagtagcagggattgaacctgggatattttgtatatgacaggaacacatgtacatattatatatcaacaatta |
210 |
Q |
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| T |
2601116 |
tagcttgtaagggggagggagaactgttggtagcagggattgaaccttggatattttacatataacaggaacatatgtacatattatatatcaacaatta |
2601215 |
T |
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| Q |
211 |
cacctgaaaa--atatactaaacataccttctaatgatagaaattataattaaaaagtaactatatatacataaatagaaaaagactgagaagatataga |
308 |
Q |
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| T |
2601216 |
cacctgaaaaatatatactaaatataccttctaatgatagaaatttgaattaaaaagtaac--tatatacatatatagcaaaagactaagaagatataga |
2601313 |
T |
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| Q |
309 |
aattaaagacagacatattttcttcg |
334 |
Q |
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| T |
2601314 |
aattaaaggcaggcatattttgttcg |
2601339 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 53519996 - 53519937
Alignment:
| Q |
97 |
caaatgttagttattagcttgtaagggggagggagaactgttagtagcagggattgaacc |
156 |
Q |
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| T |
53519996 |
caaatgctagtaattagtttgttagggggaggggaaaatgttagtagcagggattgaacc |
53519937 |
T |
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