View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_39 (Length: 333)
Name: NF1412_low_39
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 47850621 - 47850317
Alignment:
| Q |
17 |
atttaaaattacaaggaaatataatttgtctttgtgagatggtaaatttttatgagaatcagaggaacaaatcttgatcattaatatgaacaatataaaa |
116 |
Q |
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| T |
47850621 |
atttaaaattacaaggaaatataatttgtctttgtgagatggtaattttttatgagaatcagaggaacaaatcttgatcattaatatgaacaatataaaa |
47850522 |
T |
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| Q |
117 |
gttagttaaaattcacatgattactttaaaaacttacatgactttacatggaatgaatcaagtaaaagtgtgaagagagttagtcttgactcttgatctt |
216 |
Q |
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| T |
47850521 |
gttagttaaaattcacatgattactttaaaaacttacatgactttacatggaatgaatcaagtaaaagtgtgaagagagttagtcttgactcttgatctt |
47850422 |
T |
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| Q |
217 |
ttgattggatttgaatcagtgttgttaaataggaaatatttccacaatcatttatgctctcatttagcgacaaggttttcatgcgaacccaaatcatctg |
316 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47850421 |
ttgattggatttgaattagtgttgttaaatagcaaatatttccacaatcatttatgctctcatttagcgacaaggttttcatgcgaacccaaatcatctg |
47850322 |
T |
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| Q |
317 |
tgctg |
321 |
Q |
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||||| |
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| T |
47850321 |
tgctg |
47850317 |
T |
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