View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_4 (Length: 550)
Name: NF1412_low_4
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_4 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 7990417 - 7989889
Alignment:
| Q |
1 |
ttgaaaaatctaaagaagaaagaatgtaaatatgcaaaggatattcaagtatttgacttaaaattttaagcacttaa-gagatatgataacaaagatttc |
99 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7990417 |
ttgaaaaatctaaagaagtaagaatgtaaatatgcaaaggatattcaagtatttgacttaaaattttaagcacttaaagagatatgataacaaagatttc |
7990318 |
T |
|
| Q |
100 |
attatagcactcccacatcatagatgatatcatagattaagataattcctacaacatgatttcaaattacaaccagcaagcagaaaccatatagattttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7990317 |
attatagcactcccacatcatagatgatatcatagattaagataattcctacaacatgatttcaaattacaaccagcaagcagaaaccatatagattttc |
7990218 |
T |
|
| Q |
200 |
tgcaacttgagttaccccgacaaaattgcaatttaaaatcggatatggatccactgcagtcagaaaagtatgcatgcagtcactacaatacaacttctaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
7990217 |
tgcaacttgagttaccccgacaaaattgcaatttaaaatcggatatggatccactgcagtcggaaaagtatgca----gtcactacaatacaacttctaa |
7990122 |
T |
|
| Q |
300 |
atttatcactagatagatattagttcatacagctcaggagtcatgatataaagttttgaccaaaattaagctatattatattcccgtagcttaattgaag |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7990121 |
atttatcactagatagatattagttcatacagctcaggagtcatgatataaagttttgaccaaatttaagctatattatattcccgtagcttaattgaag |
7990022 |
T |
|
| Q |
400 |
actttcaaagcatactgaatacttttcccatgatattaaaaatgaaaaatcaaatttaacagaaacagtgataactcctaactctgaaagctgagttgaa |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7990021 |
actttcaaagcatactgaatacttttcccatgatattaaaaatgaaaaatcaaatttaacagaaacagtgataactcctaactctgaaagctgagttgaa |
7989922 |
T |
|
| Q |
500 |
aatgttaagtagtgtggaatatatatacctatt |
532 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
7989921 |
aatgttaagtagtgtggaatatatatacctatt |
7989889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 40616223 - 40616386
Alignment:
| Q |
4 |
aaaaatctaaagaagaaagaatgtaaatatgcaaaggatattcaagtatttgacttaaaattttaagcacttaagagatatgataacaaagatttcatta |
103 |
Q |
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||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |
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| T |
40616223 |
aaaaatctaaagaagtaagaatgtataaatgcaaaggatatttaagtatttgacttaaaattataaacacttaagagatatgataacaaagacttcatta |
40616322 |
T |
|
| Q |
104 |
tagcactcccacatcatagatgatatcatagattaagataattcctacaacatgatttcaaatt |
167 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40616323 |
tagcactcccacatcatagacgatatcatagattaagataattcctacaacatgatttcaaatt |
40616386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 380 - 508
Target Start/End: Original strand, 40616519 - 40616663
Alignment:
| Q |
380 |
ttcccgtagcttaattgaagactttcaaagcatactgaatacttttcccatgatattaaaaatgaaa-----------------aatcaaatttaacaga |
462 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
40616519 |
ttcccatagcttaattgaagactttcaaagcatactgaatacttttcccatga-attaaaaatgaaagcatgaaaataaaaaaaaatcaaatttaacaga |
40616617 |
T |
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| Q |
463 |
aacagtgataactcctaactctgaaagctgagttgaaaatgttaag |
508 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40616618 |
aacggtgataactcctaactctgaaagctgagttgaaaatgttaag |
40616663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 40616391 - 40616452
Alignment:
| Q |
210 |
gttaccccgacaaaattgcaatttaaaatcggatatggatccactgcagtcagaaaagtatg |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |
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|
| T |
40616391 |
gttaccccgacaaaattgcaatttaaaatcgaatatggatccactgtagtcgaaaaagtatg |
40616452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 5032237 - 5032063
Alignment:
| Q |
1 |
ttgaaaaatctaaagaagaaagaatgtaaatatgcaaaggatattcaagtatttgacttaaaattttaagcacttaagagatatgataacaaagatttca |
100 |
Q |
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|
|||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
5032237 |
ttgaaaaatctaaagaagcatgaatgtaaaaatgcaaaggatattcaagtatttgacttaaaattttaagcacttaagggatatgatgacaaagacttca |
5032138 |
T |
|
| Q |
101 |
ttatagcactcccacatcatagatgatatcatagattaagataattcctacaacatgatttcaaattacaaccag |
175 |
Q |
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| ||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
5032137 |
tcataacactcccacatcatggataatatcatagattaagataatttctacaacatgattttaaattacaaccag |
5032063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 21158334 - 21158281
Alignment:
| Q |
295 |
tctaaatttatcactagatagatattagttcatacagctcaggagtcatgatat |
348 |
Q |
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|||||| |||||| |||||||||||||||||||||| || |||||||||||||| |
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| T |
21158334 |
tctaaaattatcagtagatagatattagttcatacaacttaggagtcatgatat |
21158281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 17576 - 17624
Alignment:
| Q |
309 |
tagatagatattagttcatacagctcaggagtcatgatataaagttttg |
357 |
Q |
| |
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|||||||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
17576 |
tagatagatattagttcatacaacttaagagtcatgatataaagttttg |
17624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 63107 - 63161
Alignment:
| Q |
294 |
ttctaaatttatcactagatagatattagttcatacagctcaggagtcatgatat |
348 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||||||| | |||||||||||||| |
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|
| T |
63107 |
ttctaaaattatcactagatggatattggttcatacaacctaggagtcatgatat |
63161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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