View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_40 (Length: 333)
Name: NF1412_low_40
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 28274442 - 28274133
Alignment:
| Q |
10 |
atgaagagaagcatgctatcaaggaatctcagccattgaataaagattaaacgagtcatattcgacttcacataataagctctataatacaactcgaaat |
109 |
Q |
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| T |
28274442 |
atgaagagaagcatgctatcaaggaatctcagccattgaataaagattaaacgagtcatattcgacttcacataataagctctataatacaactcgaaat |
28274343 |
T |
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| Q |
110 |
ataagacatctgatatctatcatatggtcgagatatgtgactgcctaactacgtgactgcagagaatccaattccggtattattttgacatttcaagaga |
209 |
Q |
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| T |
28274342 |
ataagacatctgatatctatcatatggtcgagatatgtgactgcctaactacgtgactgcagagaatccaattccggtattattttgacatttcaagaga |
28274243 |
T |
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| Q |
210 |
taagaaatcaataatatctacatgacaaaaggaatgttgagggaaactaagtctagtagtaagcaaatacctctctaacaatattttttccatgtgagat |
309 |
Q |
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| T |
28274242 |
taagaaatcaataatatctacatgacaaaaggaatgttgagggaaactaagtctagtagtaagcaaatacctctctaacaatattttttccatgtgagat |
28274143 |
T |
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| Q |
310 |
aggttgcatc |
319 |
Q |
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|||||||||| |
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| T |
28274142 |
aggttgcatc |
28274133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 28289618 - 28289552
Alignment:
| Q |
253 |
aaactaagtctagtagtaagcaaatacctctctaacaatattttttccatgtgagataggttgcatc |
319 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28289618 |
aaactaagtgtagtggtaagcaaatacctctctaacaatattttttccatgtgagataggatgcatc |
28289552 |
T |
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