View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_44 (Length: 322)
Name: NF1412_low_44
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 17269435 - 17269686
Alignment:
| Q |
16 |
gttttgtcaaagattacaatcttcaatttgaagcattattagtagaataaataaaattccatggagtcatgcatagtggatatactatggttttcttgtt |
115 |
Q |
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| T |
17269435 |
gttttgtcaaagattacaatcttcaatttgaagcattattagtagaataaataaaattccatggagtcatgcatagtggatatactatggttttcttgtt |
17269534 |
T |
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| Q |
116 |
ttgtttgatagctcctcgtacctgcgaaatctataggtcaaagattgttccttgaacaccatttgttattcaaatttgatttaaatccttccaatcaaag |
215 |
Q |
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| T |
17269535 |
ttgtttgatagctcctcgtacctgcgaaatctataggtcaaagattgttccttgaacaccatttgttattcaaatttgatttaaatccttccaatcaaag |
17269634 |
T |
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| Q |
216 |
tcttttgtttacaacatgagatcatacatttgtctttgattaattttttaaa |
267 |
Q |
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| T |
17269635 |
tcttttgtttacaacatgagatcatatatttgtctttgattaattttttaaa |
17269686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 17269712 - 17269760
Alignment:
| Q |
264 |
taaaagtttggtagatatttgcacagttctaaatttaatgtggcctatg |
312 |
Q |
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| T |
17269712 |
taaaagtttggtagatatttgcatagttctaaattttatgtggcctatg |
17269760 |
T |
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