View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_46 (Length: 311)

Name: NF1412_low_46
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_low_46
NF1412_low_46
[»] chr3 (6 HSPs)
chr3 (6-290)||(9173409-9173699)
chr3 (200-261)||(9172369-9172430)
chr3 (222-288)||(23691618-23691684)
chr3 (222-288)||(23710057-23710123)
chr3 (222-288)||(23728513-23728579)
chr3 (222-288)||(23746969-23747035)
[»] chr2 (2 HSPs)
chr2 (9-170)||(2203607-2203768)
chr2 (209-295)||(2206190-2206276)
[»] chr7 (4 HSPs)
chr7 (9-170)||(15897257-15897418)
chr7 (200-291)||(31238850-31238941)
chr7 (208-292)||(8578580-8578664)
chr7 (211-291)||(15894718-15894798)
[»] chr5 (4 HSPs)
chr5 (9-170)||(18860714-18860875)
chr5 (232-291)||(34607123-34607182)
chr5 (221-291)||(2358601-2358671)
chr5 (209-295)||(18861707-18861793)
[»] chr1 (4 HSPs)
chr1 (9-152)||(24319779-24319922)
chr1 (210-291)||(29406841-29406922)
chr1 (217-291)||(44289380-44289454)
chr1 (217-290)||(27789319-27789392)
[»] chr8 (1 HSPs)
chr8 (9-139)||(12298013-12298143)
[»] chr6 (2 HSPs)
chr6 (201-296)||(28844792-28844887)
chr6 (122-171)||(28654247-28654296)
[»] chr4 (1 HSPs)
chr4 (217-290)||(51682021-51682094)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 9173409 - 9173699
Alignment:
Q  6 aggagcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagag 105  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||     
T  9173409 aggagcacagagacacaaagaacttcttgtagagaataatacacttcattctaatccagaattgaagatgcacctgaatttagagaagcatggtagagaa 9173508  T
Q  106 gtttatcctcatgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggggcttataattcat------gtgtaagtgcatgtg 199  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||| ||| |    
T  9173509 gtttatcctcgtgaaattttttatatattttagaaggagttgtggagtgcatgtgtagattgtggggcttataattcatgtgtgagtgtgagtgtatgcg 9173608  T
Q  200 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctca 290  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||| |||||||||||||||    
T  9173609 tgaatggaaaatgagaatggcacatgactaacttaagtgatgttttaatctcgtccctttattttaatttgatggatgtaattcattctca 9173699  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 9172430 - 9172369
Alignment:
Q  200 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttat 261  Q
    ||||||| |||||  ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  9172430 tgaatgggaaatggaaatggcacatgactaacttaagtgatgttttaatctcatccctttat 9172369  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 23691618 - 23691684
Alignment:
Q  222 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 288  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23691618 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23691684  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 23710057 - 23710123
Alignment:
Q  222 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 288  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23710057 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23710123  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 23728513 - 23728579
Alignment:
Q  222 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 288  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23728513 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23728579  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 23746969 - 23747035
Alignment:
Q  222 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 288  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23746969 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23747035  T

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Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 2203607 - 2203768
Alignment:
Q  9 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 108  Q
    |||||| ||||||||||||||| |||| || |||||||||||||||||||||| ||||||||| |||||| ||||||||||||| || ||||||||||||    
T  2203607 agcacaaagacacaaagaactttttgctgataataatacacttcattctaatccagaattgaatatgcacatgaatttagagaagcacgctagagaggtt 2203706  T
Q  109 tatcctcatgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 170  Q
    ||| |||||||||  ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  2203707 tatactcatgaaaacttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 2203768  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 2206190 - 2206276
Alignment:
Q  209 aatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataa 295  Q
    |||||||||| ||||||||| |||||| ||||  |||||||||| |  ||  ||||||||||| ||||   ||||||||||||||||    
T  2206190 aatgagaatgtcacatgactcacttaagtgataatttaatctcagccattccttttaatctgaaggctcatattcattctcatataa 2206276  T

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Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 15897418 - 15897257
Alignment:
Q  9 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 108  Q
    |||||| ||||||||||||||| |||| || |||||||||||||||||||||| | |||||||||||||| ||||||||||||| || ||||||||||||    
T  15897418 agcacaaagacacaaagaactttttgctgataataatacacttcattctaatccataattgaagatgcacatgaatttagagaagcacgctagagaggtt 15897319  T
Q  109 tatcctcatgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 170  Q
    ||| |||| ||||  ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  15897318 tatactcacgaaaacttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 15897257  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 31238850 - 31238941
Alignment:
Q  200 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    ||||||| | |||| ||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  31238850 tgaatggcacatgacaatagcacatgactcacttaagtgatgttttaatctcatccctttattttaatctgatggttgtaattcattctcat 31238941  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 8578664 - 8578580
Alignment:
Q  208 aaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcata 292  Q
    ||||||||||| |||||||||||||||| | |||||||||| ||||| |||  ||||||||||| || | | |||||||||||||    
T  8578664 aaatgagaatgacacatgactaacttaagttatgttttaatttcatcccttccttttaatctgaaggttattattcattctcata 8578580  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 15894798 - 15894718
Alignment:
Q  211 tgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||||||| |||||||||||||||| ||||  |||||||||| |  ||  ||||||||||| ||||   ||||||||||||    
T  15894798 tgagaatgacacatgactaacttaagtgataatttaatctcagccattccttttaatctgaaggctcatattcattctcat 15894718  T

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Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 18860714 - 18860875
Alignment:
Q  9 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 108  Q
    |||||| ||||||||||||||| ||||  | |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  18860714 agcacaaagacacaaagaactttttgctaataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaaccacgctagagaggtt 18860813  T
Q  109 tatcctcatgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 170  Q
    ||| |||| ||||  ||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  18860814 tatactcacgaaaacttttacatatttcaaaagaagttgtggagtgcatgtgtagattgtgg 18860875  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 34607182 - 34607123
Alignment:
Q  232 ttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  34607182 ttaagtgatgttttaatctcatccctttattttaatttgatggctgtaattcattctcat 34607123  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 2358671 - 2358601
Alignment:
Q  221 acatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||||| | |||||| || |||||||||||||||  ||  |||||||||||||| ||||||| ||||||||    
T  2358671 acatgagtcacttaagtgttgttttaatctcatccattgcttttaatctgatgggtgtaatttattctcat 2358601  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 18861707 - 18861793
Alignment:
Q  209 aatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataa 295  Q
    |||||||||||||||||||| |||||| ||||  |||||||| | |  ||  ||||||||||| ||||   ||||||||||||||||    
T  18861707 aatgagaatggcacatgactgacttaagtgataatttaatcttagccattccttttaatctgaaggctcatattcattctcatataa 18861793  T

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Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 24319779 - 24319922
Alignment:
Q  9 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 108  Q
    |||||| || |||||||||||| |||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||    
T  24319779 agcacaaaggcacaaagaactttttgctgataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaagcacgctagagaggtt 24319878  T
Q  109 tatcctcatgaaattttttatatatttcagaaggagttgtggag 152  Q
    ||| |||| ||||  ||||| |||||||| ||||||||||||||    
T  24319879 tatactcacgaaaaattttacatatttcaaaaggagttgtggag 24319922  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 29406922 - 29406841
Alignment:
Q  210 atgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||| ||| |||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29406922 atgacaatagcacatgactcatttaagtgatgttttaatctcatccctttattttaatctgatggctgtaattcattctcat 29406841  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 44289454 - 44289380
Alignment:
Q  217 tggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||||||||| | |||||| |||||||||||||||| |  ||  ||||||||||| |||||||||| ||||||||    
T  44289454 tggcacatgagtcacttaagtgatgttttaatctcacccattatttttaatctgacggctgtaatttattctcat 44289380  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 27789319 - 27789392
Alignment:
Q  217 tggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctca 290  Q
    |||||||||| | |||||| |||||||||||||| |||  ||  |||||||| |||||||| |||| |||||||    
T  27789319 tggcacatgagtcacttaagtgatgttttaatctaatccattgtttttaatccgatggctgcaatttattctca 27789392  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 12298143 - 12298013
Alignment:
Q  9 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 108  Q
    ||||||||| |||||||||||||| ||||| |||  |||||||||||||| || || ||||||||||||| || |||||||||| |||| ||||||| ||    
T  12298143 agcacagaggcacaaagaacttctggcagataatgctacacttcattctattccagcattgaagatgcacgtggatttagagaagcatggtagagagatt 12298044  T
Q  109 tatcctcatgaaattttttatatatttcaga 139  Q
    ||| ||||||||| |||||| ||||||||||    
T  12298043 tatactcatgaaaatttttacatatttcaga 12298013  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 28844792 - 28844887
Alignment:
Q  201 gaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataag 296  Q
    |||||| | |||| ||| |||||||||| | |||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  28844792 gaatggcacatgacaatagcacatgactcatttaagtgatgttttaatctcaaccctttattttaatctgatggctgtaattcattctcatataag 28844887  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 28654296 - 28654247
Alignment:
Q  122 ttttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggg 171  Q
    ||||||| ||||||  || |||||||||||||||||||||||||||||||    
T  28654296 ttttttaaatattttggagggagttgtggagtgcatgtgtagattgtggg 28654247  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 51682094 - 51682021
Alignment:
Q  217 tggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctca 290  Q
    ||||||||||||||||||  | ||||||||||| |||| |||  |||||||||  ||||||||||| |||||||    
T  51682094 tggcacatgactaacttaggttatgttttaatcgcatcccttgcttttaatctattggctgtaatttattctca 51682021  T

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