View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_47 (Length: 305)
Name: NF1412_low_47
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38997268 - 38997502
Alignment:
| Q |
1 |
tgtaccaaaggataatcaattgaaaagaagagaagcaataggcctctccttgagttttggtcttctacattctttattgcaaccaataatacccactgca |
100 |
Q |
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| T |
38997268 |
tgtacaaaaggataatcaattgaaaagaagagaagcaataggcctctccttgagttttggtcttctacattctttattgcaaccaataatacccactgca |
38997367 |
T |
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| Q |
101 |
acagcagctgaagcagttccatgtcaattaactgtggctccttcaggcctttcctattgtgataaagttgttggctatggtcctcaggctgttaagggac |
200 |
Q |
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| T |
38997368 |
acagctgctgaagcagttccatgtcaattaactgtggctccttcaggcctttcctattgtgataaagttgttggctatggtcctcaggctgttaagggac |
38997467 |
T |
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| Q |
201 |
agctcattaaggtaaccatgtcacagtttaatact |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
38997468 |
agctcattaaggtaaccatgtcacagtttaatact |
38997502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 38997580 - 38997631
Alignment:
| Q |
254 |
attgtaaaagtagactttatataaccaatgaaatgaacaactaactaacttt |
305 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
38997580 |
attgtaaaagtagactttatataactaattaaatgaacaactaactaacttt |
38997631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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