View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_48 (Length: 304)
Name: NF1412_low_48
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 52806852 - 52807138
Alignment:
| Q |
18 |
aggctgagagtgaatcaaaggagaaggtgttgttggtaacctattaagagctacattgaaacaaagctcaagagctctagattgaagtggatgttgtgaa |
117 |
Q |
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| T |
52806852 |
aggctgagagtgaatcaaaggagaaggtgttgttggtaacctattaagagctacattgaaacaaagctcaagagccctagattgaagtggatgttgtgaa |
52806951 |
T |
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| Q |
118 |
gtttgatggtgaggctgatgagacttaagacaagctcttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgtg |
217 |
Q |
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| T |
52806952 |
gtttgatggtgaggctgatgagacttaagacaagcccttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgtg |
52807051 |
T |
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| Q |
218 |
gatgacctcgccttctagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctc |
304 |
Q |
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| T |
52807052 |
gatgacctcgccttctagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctc |
52807138 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 16611286 - 16611234
Alignment:
| Q |
58 |
ctattaagagctacattgaaacaaagctcaagagctctagattgaagtggatg |
110 |
Q |
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| T |
16611286 |
ctattaagagcaacattgaagcaaagttcaagagctctacattgaagaggatg |
16611234 |
T |
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