View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_5 (Length: 529)
Name: NF1412_low_5
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 5800868 - 5800364
Alignment:
| Q |
19 |
aattaaccattggttgtaaacaaaaacaactgaaagtttttgacgaattcctttctctatctctttgtttggtgtgtgatgtagtgtatgtgaagtgcca |
118 |
Q |
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| T |
5800868 |
aattaaccattggttgtaaacaaaaacaactgaaagtttttgacgaattcctttctctatctctttgtttggtgtgtgatgtagtgtatgtgaagtgcca |
5800769 |
T |
|
| Q |
119 |
cttgtgcaatcatatatgcttaacttcttatcaaattaaaaatatatccatatcatatattcagttgaannnnnnngctatttttgatagacggttattg |
218 |
Q |
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| T |
5800768 |
cttgtgcaatcacatatgcttaacttcttatcaaattaaaaatatatccatatcatatattcagttgaatttttttgctatttttgatagacggttattg |
5800669 |
T |
|
| Q |
219 |
ttgttactatttctggaaaatattataccttatcattatccgtatgaaaatctttnnnnnnn-tcattatccatatgaaaaaatgtcattgatttgaatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5800668 |
ttgttactatttctggaaaatattataccttatcattatccgtatgaaaatctttaaaaaaaatcattatccatatgaaaaaatgtcattgatttgaatt |
5800569 |
T |
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| Q |
318 |
gagttgtgtgtgttattgttgtgttcattgtcgtgtcgggatcgatgggattgtgcatctcaggagcttctttagctccttctactgatacaaattatta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800568 |
gagttgtgtgtgttattgttgtgttcattgtcgtgtcgggatcgatgggattgtgcatctcaggagcttctttagctccttctactgatacaaattatta |
5800469 |
T |
|
| Q |
418 |
ttatgaatctccttcattttcatcctatacacataaacgtgattccggtgtggaaatggggttgcatagagttcctggaagaatattcttgaatggttca |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800468 |
ttatgaatctccttcattttcatcctatacacataaacgtgattcgggcgtggaaatggggttgcatagagttcctggaagaatattcttgaatggttca |
5800369 |
T |
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| Q |
518 |
tctca |
522 |
Q |
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| T |
5800368 |
tctca |
5800364 |
T |
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