View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_50 (Length: 302)

Name: NF1412_low_50
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_low_50
NF1412_low_50
[»] chr3 (15 HSPs)
chr3 (17-297)||(19603632-19603912)
chr3 (87-297)||(19581314-19581524)
chr3 (87-269)||(19563426-19563613)
chr3 (108-297)||(19593459-19593648)
chr3 (87-269)||(19549180-19549363)
chr3 (87-292)||(19538989-19539198)
chr3 (115-266)||(19609555-19609705)
chr3 (93-266)||(19653547-19653720)
chr3 (85-270)||(19557176-19557363)
chr3 (106-268)||(19617208-19617373)
chr3 (73-209)||(19612244-19612379)
chr3 (103-248)||(19626093-19626238)
chr3 (100-248)||(19646593-19646741)
chr3 (87-190)||(18479257-18479360)
chr3 (87-192)||(32150919-32151025)
[»] chr6 (1 HSPs)
chr6 (93-269)||(18025124-18025301)
[»] chr7 (10 HSPs)
chr7 (87-214)||(21604976-21605103)
chr7 (87-253)||(21601399-21601564)
chr7 (31-269)||(21594180-21594420)
chr7 (104-269)||(24203796-24203961)
chr7 (109-265)||(21611175-21611331)
chr7 (103-269)||(21587223-21587389)
chr7 (97-188)||(21581832-21581923)
chr7 (111-252)||(12421451-12421592)
chr7 (111-162)||(21820789-21820840)
chr7 (197-267)||(21581736-21581808)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 19603912 - 19603632
Alignment:
Q  17 taccaaatactagaaaaagatataagaaaataatatcaatattttgttaatgtatgttagatgaaatataaacttgaggttcaaagttcatatgtttctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19603912 taccaaatactagaaaaagatataagaaaataatatcaatattttgttaatgtatgttagatgaaatataaacttgaggttcaaagttcatatgtttctt 19603813  T
Q  117 acccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaattttatcttagaactctat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19603812 acccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaattttatcttagaactctat 19603713  T
Q  217 tattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttct 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19603712 tattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttct 19603632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 297
Target Start/End: Complemental strand, 19581524 - 19581314
Alignment:
Q  87 aacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt 186  Q
    ||||| ||||| |||||||||||||||||||||  ||| |||||||||  ||||| ||||||||||||||||||| || || ||||||||||||||||||    
T  19581524 aacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtactgggaaatgtgttttgccatt 19581425  T
Q  187 tttt-gttaaaattttatcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgatttt 285  Q
    |||| || ||||||||||||||  ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | || || ||||||||    
T  19581424 tttttgtgaaaattttatcttaagactctattattttttgttctcgcaatatgcatagcaaacttcaacttcattatatagta-ctcatgatatgatttt 19581326  T
Q  286 acctttgcttct 297  Q
    ||||||||||||    
T  19581325 acctttgcttct 19581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 269
Target Start/End: Complemental strand, 19563613 - 19563426
Alignment:
Q  87 aacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt 186  Q
    ||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  19563613 aacttaaggttcaaagttcatatgtttcttacctgaagctagaatcaacacaatgcataaaattcccaagagacagtattgggaaatgtgttttgccatt 19563514  T
Q  187 -ttttgttaaaa----ttttatcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtac 269  Q
     |||||| || |    ||||||||||||||||||||||  |||||||||| |||||| |||||||||||||| |||||||||||||||    
T  19563513 tttttgtgaagaattcttttatcttagaactctattatcttttgttctcgtaatatgaataacaaacttcaagttcattatatagtac 19563426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 108 - 297
Target Start/End: Complemental strand, 19593648 - 19593459
Alignment:
Q  108 atgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatttttt-gttaaaattttatctt 206  Q
    ||||||||||||  |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||  ||||||||||| || ||  |||||||      
T  19593648 atgtttcttacctgaagctagaaccaacgcaatgcataaaattcctaagagaaaatattgggaaatgtgtcctgccatttttttgtgaattttttatcca 19593549  T
Q  207 agaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttct 297  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | || || ||||||||||||||||||||    
T  19593548 agaactctattattgtttgttctcgcaatatgtatagcaaacttcaacttcattatatagta-ctcatgatatgattttacctttgcttct 19593459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 269
Target Start/End: Complemental strand, 19549363 - 19549180
Alignment:
Q  87 aacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt 186  Q
    ||||| ||||||||||||| |||||||||||||  ||| |||||||||| ||||||||||||||||||||||| | || || ||||||||||||||||||    
T  19549363 aacttaaggttcaaagttcgtatgtttcttacctgaagttagaaccaacgcaatgcataaaattcccaagagacagtactgagaaatgtgttttgccatt 19549264  T
Q  187 -ttttgttaaaattttatcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtac 269  Q
     |||||| || ||||||| |||||||||||||||  |||||||| | |||||| |||||||||||||| |||||||||||||||    
T  19549263 tttttgtgaagattttattttagaactctattatcttttgttcttgaaatatgaataacaaacttcaagttcattatatagtac 19549180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 87 - 292
Target Start/End: Complemental strand, 19539198 - 19538989
Alignment:
Q  87 aacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt 186  Q
    ||||| |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||| |||||| | || ||  |||||||||||||||||    
T  19539198 aacttaaggttcaaagttcatatgtttcttacctgaagctagaaccaacgcaatgcataaaattcctaagagacagtactggaaaatgtgttttgccatt 19539099  T
Q  187 -ttttgttaaaa----ttttatcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatga 281  Q
     |||||| || |    ||||||||||||||||||||||  |||||||||| |||||| |||||||||||||| |||||||||||||| | || || ||||    
T  19539098 tttttgtgaagaattcttttatcttagaactctattatcttttgttctcgtaatatgaataacaaacttcaagttcattatatagta-ctcatgatatga 19539000  T
Q  282 ttttacctttg 292  Q
    |||||||||||    
T  19538999 ttttacctttg 19538989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 115 - 266
Target Start/End: Complemental strand, 19609705 - 19609555
Alignment:
Q  115 ttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaattttatcttagaactct 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||| || ||||||||||||| ||||    
T  19609705 ttacctaaagctagaaccaacacaatgcataaaattcccaagagacaatactgggaaatgtgttttgccat-ttttgtgaagattttatcttagagctct 19609607  T
Q  215 attattgtttgttctcgcaatatgcataacaaacttcaacttcattatatag 266  Q
    ||||||||||||| |||||||||||| | ||||||| || ||||||||||||    
T  19609606 attattgtttgttttcgcaatatgcacagcaaacttaaagttcattatatag 19609555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 93 - 266
Target Start/End: Complemental strand, 19653720 - 19653547
Alignment:
Q  93 aggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgt 192  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||||| | || || |||||||||||||||||||||| |    
T  19653720 aggttcaaagttcatatgtttcttacctaaagttagaaccaacgcaatgcataaaattgccaagagacagtactgggaaatgtgttttgccattttttat 19653621  T
Q  193 taaaattttatcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatag 266  Q
     || ||||||||||| | |||||||||  |||||| ||||||||||||||  ||||| ||| ||||||||||||    
T  19653620 gaagattttatcttatagctctattatcttttgttttcgcaatatgcatagaaaactccaagttcattatatag 19653547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 270
Target Start/End: Complemental strand, 19557363 - 19557176
Alignment:
Q  85 taaacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgcca 184  Q
    ||||||| ||||| |||||||||||||||||||||  |||||||||||||  ||||| ||||||||||||||||| ||||||| |||||| |||| | ||    
T  19557363 taaacttaaggttgaaagttcatatgtttcttacctgaagctagaaccaaggcaatgtataaaattcccaagagacaatattgggaaatgggtttcgaca 19557264  T
Q  185 --ttttttgttaaaattttatcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtacc 270  Q
      |||||||| || |||||||||||||||||||||||  |||||||||| |||||| |||||||||||||| || |||||||| ||||    
T  19557263 ttttttttgtgaagattttatcttagaactctattatcttttgttctcgtaatatgaataacaaacttcaagtttattatatactacc 19557176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 19617373 - 19617208
Alignment:
Q  106 atatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgtt----aaaatttt 201  Q
    ||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||  |||| | |||||||||||||| ||    || |||||    
T  19617373 atatgtttcttacccgaagctagaaccaacgcaatgcataaaactccaaagagaaaatattggaaaatatattttgccattttttttttttgaagatttt 19617274  T
Q  202 atcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagta 268  Q
    ||||| | | | |||||| ||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  19617273 atctttg-agtttattatcgtttgttttcgcaatatgcatagcaaacttcaagttcattatatagta 19617208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 209
Target Start/End: Complemental strand, 19612379 - 19612244
Alignment:
Q  73 ttagatgaaatataaacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaa 172  Q
    ||||| ||||||||| ||| | ||| |||||| ||||||||||||||  |||||||||||||| ||||||| ||||||||||| ||| ||||||| ||||    
T  19612379 ttagaagaaatataa-cttaatgttgaaagtttatatgtttcttacctgaagctagaaccaacgcaatgcagaaaattcccaaaagacaatattgggaaa 19612281  T
Q  173 tgtgttttgccattttttgttaaaattttatcttaga 209  Q
    |||||||||||||||||||| || |||||||||||||    
T  19612280 tgtgttttgccattttttgtgaagattttatcttaga 19612244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 248
Target Start/End: Complemental strand, 19626238 - 19626093
Alignment:
Q  103 ttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaatttta 202  Q
    |||||||||||||||||  ||| |||||||||| |||||||||||||| |||| ||| | || || |||||||||||||||||||||| | || ||||||    
T  19626238 ttcatatgtttcttacctgaagttagaaccaacgcaatgcataaaattgccaatagacagtaatgagaaatgtgttttgccattttttatgaagatttta 19626139  T
Q  203 tcttagaactctattattgtttgttctcgcaatatgcataacaaac 248  Q
    ||||| | |||||||||  |||||| || ||||||||||| |||||    
T  19626138 tcttatagctctattatcttttgttttcacaatatgcatagcaaac 19626093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 248
Target Start/End: Complemental strand, 19646741 - 19646593
Alignment:
Q  100 aagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaatt 199  Q
    |||||||||| |||||||||  |||||||||||||| |||||||||||||| | |||||| | || ||  |||||| |||||||||||||| | || |||    
T  19646741 aagttcatatatttcttacctgaagctagaaccaacgcaatgcataaaattgctaagagacagtactggaaaatgttttttgccattttttatgaagatt 19646642  T
Q  200 ttatcttagaactctattattgtttgttctcgcaatatgcataacaaac 248  Q
    |||||||| | |||||||||  |||||| || ||||||||||| |||||    
T  19646641 ttatcttatagctctattatcttttgttttcacaatatgcatagcaaac 19646593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 18479257 - 18479360
Alignment:
Q  87 aacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt 186  Q
    ||||| ||||| |||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||| | | |  || ||||||||||||||||||    
T  18479257 aacttaaggttgaaagttcatatgtttcttacctgaagctagaaccaacgcaatgcataaaattcccaagaaacagtgctgggaaatgtgttttgccatt 18479356  T
Q  187 tttt 190  Q
    ||||    
T  18479357 tttt 18479360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 32150919 - 32151025
Alignment:
Q  87 aacttgaggttcaaagttcatatgtttcttacccaaagcta-gaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccat 185  Q
    ||||| |||||||||||||||||||||||||    ||| || |||||||| |||||||||||||| |||||||| | || |  |||||||||||||||||    
T  32150919 aacttaaggttcaaagttcatatgtttcttaattgaagttaagaaccaacgcaatgcataaaattgccaagagacagtactcggaaatgtgttttgccat 32151018  T
Q  186 tttttgt 192  Q
    |||||||    
T  32151019 tttttgt 32151025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 18025301 - 18025124
Alignment:
Q  93 aggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt-ttttg 191  Q
    ||||| |||||||||||||||||||||  | |||||||||||| |||||||||||||| |||| ||| ||||||| ||||| |||||||||||| |||||    
T  18025301 aggttgaaagttcatatgtttcttacctgaggctagaaccaacgcaatgcataaaattgccaacagacaatattgagaaatatgttttgccatttttttg 18025202  T
Q  192 ttaaaattttatcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtac 269  Q
    | || |||||||||||||||||||||||  ||||||||| ||||||| ||||||||||| || |||||||||||||||    
T  18025201 tgaagattttatcttagaactctattatcttttgttctcccaatatgaataacaaactttaaattcattatatagtac 18025124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 21605103 - 21604976
Alignment:
Q  87 aacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt 186  Q
    ||||| ||||||||| || ||||||||||||||  ||||| |||||||| ||||||| |||| |||||||||||||||||| |||||||| |||||||||    
T  21605103 aacttaaggttcaaaattaatatgtttcttacctgaagcttgaaccaacgcaatgcacaaaagtcccaagagaaaatattgggaaatgtggtttgccatt 21605004  T
Q  187 ttttgttaaaattttatcttagaactct 214  Q
    |||||| || |||||||||| |||||||    
T  21605003 ttttgtgaagattttatctttgaactct 21604976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 21601564 - 21601399
Alignment:
Q  87 aacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt 186  Q
    ||||| |||||||||||||| |||   ||||||| |||| ||||||||| |||||||||||| |||||||||||||||||| ||||| | ||||||||||    
T  21601564 aacttaaggttcaaagttcagatg---cttacccgaagccagaaccaacgcaatgcataaaagtcccaagagaaaatattgagaaatatattttgccatt 21601468  T
Q  187 ttttgttaaaattttatcttagaactctattattgtttgttctcgca--atatgcataacaaacttcaa 253  Q
    | |||| || ||| ||||||| | |||||||||  |||||| | |||  ||||||||| ||||||||||    
T  21601467 tcttgtgaagattgtatcttaaagctctattatcttttgtttttgcaatatatgcatagcaaacttcaa 21601399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 269
Target Start/End: Original strand, 21594180 - 21594420
Alignment:
Q  31 aaaagatataagaaaataatatca--atattttgttaatg-tatgttagatgaaatataaacttgaggttcaaagttcatatgtttcttacccaaagcta 127  Q
    |||||| ||||||||||| ||| |  |||||||||||||  ||||||||| |||||| || | | || || ||| || ||| ||||||||||| ||||||    
T  21594180 aaaagaaataagaaaatactattatcatattttgttaattatatgttagaagaaatagaa-cgtaagattaaaattttatacgtttcttacccgaagcta 21594278  T
Q  128 gaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaattttatcttagaactctattattgtttgtt 227  Q
    |||||||| ||||| | |||| | |||||| ||||||||| |  || |||||||||||||||  |  | |||||||||||||||||||||||  ||||||    
T  21594279 gaaccaacgcaatgaacaaaagtgccaagaaaaaatattgggctatatgttttgccatttttcttgtagattttatcttagaactctattatattttgtt 21594378  T
Q  228 ctcgcaatatgcataacaaacttcaacttcattatatagtac 269  Q
    |||| | ||||||   ||||||||||  ||||||||||||||    
T  21594379 ctcgtattatgcaatgcaaacttcaagctcattatatagtac 21594420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 104 - 269
Target Start/End: Original strand, 24203796 - 24203961
Alignment:
Q  104 tcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaattttat 203  Q
    ||||||||||||||||| |||| || || | || |||||| |||| ||||||||||||| ||||  ||||||||||| ||||||||||| ||||||||||    
T  24203796 tcatatgtttcttacccgaagccaggacaaccataatgcaaaaaagtcccaagagaaaagattggcaaatgtgtttttccattttttgtgaaaattttat 24203895  T
Q  204 cttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtac 269  Q
    |||  |||||||||||  | |||||  | |||||| ||| ||| ||| || |||||||||||||||    
T  24203896 ctttcaactctattatcttatgttcgtgtaatatggatagcaagctttaagttcattatatagtac 24203961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 265
Target Start/End: Complemental strand, 21611331 - 21611175
Alignment:
Q  109 tgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgcca--ttttttgttaaaattttatctt 206  Q
    |||||||||||  ||| ||| |  ||||||||||| |||| ||||||||||||||||||  |||||||||||||||  ||||||||| | ||||||||||    
T  21611331 tgtttcttacctgaagataggagaaacacaatgcacaaaactcccaagagaaaatattggaaaatgtgttttgccattttttttgtttagattttatctt 21611232  T
Q  207 agaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatata 265  Q
    |||||||| ||||  |||| ||||||||||  |||| || ||||||| |||||||||||    
T  21611231 agaactctgttatattttgctctcgcaata--catagcatacttcaagttcattatata 21611175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 21587223 - 21587389
Alignment:
Q  103 ttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaatttta 202  Q
    |||||||||||||||||| | ||||||||||||  |||| | |||| | |||||| || |||||    ||| |||||| ||||||||  || | ||||||    
T  21587223 ttcatatgtttcttacccgatgctagaaccaacggaatgaacaaaagtgccaagaaaagatatttgagaatatgttttcccatttttcttttagatttta 21587322  T
Q  203 tcttagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtac 269  Q
    |||||||||||||||||  |||||||| ||| |||||||  |||||||| | || ||||||||||||    
T  21587323 tcttagaactctattatcttttgttcttgcattatgcattgcaaacttctagttgattatatagtac 21587389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 21581923 - 21581832
Alignment:
Q  97 tcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatttt 188  Q
    ||||||||||||| |||||||||||||| |||  ||||| ||||| | |||| ||||| |||||||||||| ||||| ||||||||||||||    
T  21581923 tcaaagttcatatatttcttacccaaagttagggccaacgcaatgaacaaaagtcccacgagaaaatattgggaaatatgttttgccatttt 21581832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 12421451 - 12421592
Alignment:
Q  111 tttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccattttttgttaaaattttatcttagaa 210  Q
    |||||||||| |||| || || ||| |||||||||||| ||| || |||||| || |  ||| |||| |||||||||||||| || |||| ||||||||     
T  12421451 tttcttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagatcggaaaaagtgtgttgccattttttgtgaagatttcatcttagag 12421550  T
Q  211 ctctattattgtttgttctcgcaatatgcataacaaacttca 252  Q
    ||||||| |  |||||||| |  ||||||||| |||||||||    
T  12421551 ctctattttattttgttcttgagatatgcatagcaaacttca 12421592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 21820840 - 21820789
Alignment:
Q  111 tttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaa 162  Q
    |||||||||  ||||||| |||| |||||||||||||||||| |||||||||    
T  21820840 tttcttaccagaagctaggaccagcacaatgcataaaattccaaagagaaaa 21820789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 21581808 - 21581736
Alignment:
Q  197 attttatcttagaactctattattgtttgttctcgcaatatgc--ataacaaacttcaacttcattatatagt 267  Q
    |||||||||||||||||||||||  |||||||| | | ||| |  ||| |||||||||| |||||||||||||    
T  21581808 attttatcttagaactctattatcttttgttcttgtattattcatatagcaaacttcaagttcattatatagt 21581736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University