View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_51 (Length: 301)

Name: NF1412_low_51
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_low_51
NF1412_low_51
[»] chr4 (1 HSPs)
chr4 (1-285)||(30774304-30774588)
[»] chr7 (9 HSPs)
chr7 (1-270)||(8615767-8616036)
chr7 (1-282)||(8586541-8586822)
chr7 (177-281)||(6788740-6788844)
chr7 (114-257)||(13334225-13334368)
chr7 (214-282)||(8666684-8666752)
chr7 (177-277)||(8674450-8674550)
chr7 (114-282)||(10495206-10495374)
chr7 (214-281)||(17259498-17259565)
chr7 (211-281)||(17267198-17267268)
[»] chr2 (1 HSPs)
chr2 (1-270)||(16662842-16663111)
[»] chr1 (1 HSPs)
chr1 (1-270)||(15594090-15594359)
[»] chr5 (1 HSPs)
chr5 (80-128)||(28219049-28219097)
[»] chr8 (1 HSPs)
chr8 (48-131)||(43743915-43743998)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 30774304 - 30774588
Alignment:
Q  1 agcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||     
T  30774304 agcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatctttagaccattcctcaact 30774403  T
Q  101 tgtaaatgcagccatctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataat 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||| ||  ||||||||| | |||||||||||||||||||||||||||  ||||    
T  30774404 tgtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaat 30774503  T
Q  201 ttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30774504 ttcttctctggataacctttctttgtcgttggttatcgtgatctcattcatattgccagtggatttttccatagcagaaacattc 30774588  T

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Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 8615767 - 8616036
Alignment:
Q  1 agcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacc 100  Q
    ||||||||||||||||| | ||||||||  ||||| ||||  | ||||||||||||||||||||||   || ||| || ||||||||||||||||||||     
T  8615767 agcaaatttgtagccacagtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaact 8615866  T
Q  101 tgtaaatgcagccatctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtact-ctctagcttcttgaatcatttttataa 199  Q
    ||||||||||| |||||||| ||||||||||| | | |||||||| |||| |   ||||||||| | ||||| |||| ||||||||||||| |||| |||    
T  8615867 tgtaaatgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcggtactcctct-gcttcttgaatcagttttttaa 8615965  T
Q  200 tttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttcc 270  Q
    |||| ||    ||||||||||||||||| ||||||||||| || || ||  |||||||||| |||||||||    
T  8615966 tttcatcagccgataacctttctttgtcattggttatcgttatttcatttgtattgccagtagatttttcc 8616036  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 8586822 - 8586541
Alignment:
Q  1 agcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacc 100  Q
    |||||||||||||||| || |||||||| |||||||||||| | ||||||||| ||   |||||  || |  ||| || |||||||||||||||| |||     
T  8586822 agcaaatttgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaact 8586723  T
Q  101 tgtaaatgcagccatctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactc-tctagcttcttgaatcatttttataa 199  Q
    ||||||  ||  ||||||||| |||||||||| ||| |||||||| |||| ||  ||| |||||   |||| | ||| ||||||||||||| | || |||    
T  8586722 tgtaaacacaatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcagcgaggtacacctct-gcttcttgaatcagtcttttaa 8586624  T
Q  200 tttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaaca 282  Q
    |||| ||    ||||||||||||||||| ||||||||||| || |||||  ||||||||| |||| ||||| | |||||||||    
T  8586623 tttcatcagccgataacctttctttgtcattggttatcgttatttcgtttgtattgccagaggatatttccttcgcagaaaca 8586541  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 6788740 - 6788844
Alignment:
Q  177 agcttcttgaatcatttttataatttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagca 276  Q
    |||||||| ||||| |||| ||||||| || ||  | |||||||||||||  |||||||| || ||||| ||||||||||| |||||||||||  |||||    
T  6788740 agcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaatctcattcatattgcccgtggatttttcagtagca 6788839  T
Q  277 gaaac 281  Q
    |||||    
T  6788840 gaaac 6788844  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 257
Target Start/End: Complemental strand, 13334368 - 13334225
Alignment:
Q  114 atctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataatttcttctctggat 213  Q
    ||||||||||||||||||| | | ||||||||||||| || |||||||  |   ||| ||  ||||||||| ||||||||||  |||||||    | |||    
T  13334368 atctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatcattttttcaatttctaacattgat 13334269  T
Q  214 aacctttctttgtcgttggttatcgtgatctcgttcatattgcc 257  Q
    |||||||||||||| || || || |||||| |||||||||||||    
T  13334268 aacctttctttgtcattagtaatggtgatcgcgttcatattgcc 13334225  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 8666684 - 8666752
Alignment:
Q  214 aacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaaca 282  Q
    |||||||||||||| |||||||| ||||||  |||||||||||| |||||| ||||| |||||| ||||    
T  8666684 aacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaaca 8666752  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 8674550 - 8674450
Alignment:
Q  177 agcttcttgaatcatttttataatttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagca 276  Q
    |||||||||||||| |||  ||||||||||| | || ||||||||||||| ||| ||||| || ||||||||  |||| || ||||||| |||| |||||    
T  8674550 agcttcttgaatcaatttgttaatttcttctattgacaacctttctttgttgtttgttattgttatctcgttggtatttccggtggattgttccttagca 8674451  T
Q  277 g 277  Q
    |    
T  8674450 g 8674450  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 282
Target Start/End: Complemental strand, 10495374 - 10495206
Alignment:
Q  114 atctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataatttcttctctggat 213  Q
    |||||||||| |||||||| | | ||||||||||||| ||||||||||  |   ||| |   ||||||||| |||||||||| ||||||||    | ||     
T  10495374 atctaatgcactcattaccttggccttccttaagaatttcatatcttcgacatggtatttcttagcttctttaatcatttttttaatttctaacattgac 10495275  T
Q  214 aacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaaca 282  Q
    |||||||||||||| || || || |||||| ||||||||||||| || ||| | ||| |||||| ||||    
T  10495274 aacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaaca 10495206  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 17259498 - 17259565
Alignment:
Q  214 aacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaac 281  Q
    |||||| ||||||| |||||||| || ||||| ||| || ||||||||||||| ||||||||||||||    
T  17259498 aaccttcctttgtcattggttattgtaatctcattcttactgccagtggatttgtccatagcagaaac 17259565  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 17267198 - 17267268
Alignment:
Q  211 gataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaac 281  Q
    ||||||||| ||||||| |||||||| || ||||| ||| || | ||||||||||| ||||||||||||||    
T  17267198 gataaccttcctttgtcattggttattgtaatctcattcttactaccagtggatttgtccatagcagaaac 17267268  T

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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 16663111 - 16662842
Alignment:
Q  1 agcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacc 100  Q
    ||||||| | ||||||| | |||||||| ||||||||||||   ||||||  | || |||||||| || || | | || |||||||||||||||||||      
T  16663111 agcaaatctttagccaccgtaattgcatgattgatctttttatttttttggaaagaaagctttaatttgacattcttattctttagagcattcctcaatt 16663012  T
Q  101 tgtaaatgcagccatctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataat 200  Q
    ||||||||||| |||||||||||||||||||| | | |||||||| |||| ||  |||||||||   ||||||  ||||||||||||||| ||||  |||    
T  16663011 tgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaat 16662912  T
Q  201 ttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttcc 270  Q
    |||  |||||||||||||||||||||| ||||||||||||||||| ||| || | || |||||| |||||    
T  16662911 ttcgactctggataacctttctttgtcattggttatcgtgatctcattcttacttccggtggatctttcc 16662842  T

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Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 15594090 - 15594359
Alignment:
Q  1 agcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacc 100  Q
    ||||||||||||||||||| ||||||| ||||||||||| | | || || ||| || || ||||| || || ||| || |||| |||||||| ||||||     
T  15594090 agcaaatttgtagccactgtaattgcaccattgatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaact 15594189  T
Q  101 tgtaaatgcagccatctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataat 200  Q
    ||||||  ||| ||||||||||||||||||||   | |||||||| |||| ||  ||||||||| |  || ||    |||||||||||||||||| ||||    
T  15594190 tgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaat 15594289  T
Q  201 ttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttcc 270  Q
    ||| | |   || |||||||||||||| |||||||| |||||||||||  |||||||||||||| |||||    
T  15594290 ttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttcc 15594359  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 28219049 - 28219097
Alignment:
Q  80 tctttagagcattcctcaacctgtaaatgcagccatctaatgcattcat 128  Q
    |||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  28219049 tctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcat 28219097  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 43743915 - 43743998
Alignment:
Q  48 ttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaatgcattcattac 131  Q
    |||||| || |||||||| || || ||| || |||||| ||||||||||||| ||||||  ||  |||||||||||||||||||    
T  43743915 ttgagaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattac 43743998  T

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