View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_56 (Length: 281)
Name: NF1412_low_56
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_56 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 25 - 281
Target Start/End: Original strand, 29032515 - 29032771
Alignment:
| Q |
25 |
cttcctcttcctcttccacttctgcaaccaacaaaacaggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatgcagccgagat |
124 |
Q |
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| T |
29032515 |
cttcctcttcctcttccacttctgcaaccaacaaaactggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatgcagccgagat |
29032614 |
T |
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| Q |
125 |
aagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatccatgcgcggt |
224 |
Q |
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| T |
29032615 |
aagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatccatgcgcggt |
29032714 |
T |
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| Q |
225 |
tccaaagctcgaaccaatttcttctatcccgaaaccaccgaacaaaaccttcttcat |
281 |
Q |
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| T |
29032715 |
tccaaagctcgaaccaatttcttctatcccgaaacaaccgaacaaaaccttcttcat |
29032771 |
T |
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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 14158570 - 14158661
Alignment:
| Q |
78 |
taccgtggagtccgacgccgaccatggggccgttatgcagccgagataagagacccacattccaaagaacgccgctggctcggaactttcga |
169 |
Q |
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| T |
14158570 |
taccgcggagttcgccgcagaccatggggccgctatgcagctgagataagagaccctcagtccaaagaacgccgctggcttggaaccttcga |
14158661 |
T |
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