View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_57 (Length: 279)
Name: NF1412_low_57
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 37169260 - 37169478
Alignment:
| Q |
13 |
atactcgaacctgtggagttattgagcttttctttgcaaacataagtccatgtgttaaataatttcaatgtatggtcatcctccataatcctgcacctca |
112 |
Q |
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| T |
37169260 |
atactcgaacctgtggagttattgagcttttctttgcaaacataagtccatgtgttaaataatttcaatgtattgtcatcctccataatcctgcacctca |
37169359 |
T |
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| Q |
113 |
cgcttcatcctatcctttcnnnnnnnccctataattatttgatgtccatatcaatacattttcaatcattttaaacaaaaataagacgcacttttttaat |
212 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37169360 |
cgcttcatcctatcctttcattttttccctataattatttgatgtccatatcaatacattttcaataattttaaacaaaaataagacgcacttttttaat |
37169459 |
T |
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| Q |
213 |
atactttttcatttgtacc |
231 |
Q |
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||||||||||||||||||| |
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| T |
37169460 |
atactttttcatttgtacc |
37169478 |
T |
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