View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_59 (Length: 275)
Name: NF1412_low_59
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 35902597 - 35902358
Alignment:
| Q |
17 |
cagggatgaggtatacatacataaaaagttaccatagcctcaaatattttttatcataatatataatagtaattgatgggttatacttgtgctattttat |
116 |
Q |
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| T |
35902597 |
cagggatgaggtatacatacataaaaagttactatagcctcaaatattttttatcataatatataatagtaattgatgg-ttatacttgtgctattttat |
35902499 |
T |
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| Q |
117 |
caaattagattcaagagttacctgcaaaggcagaggtaattgctaggtcagataaaactggaattgagatgtttaaatatggagatcatattatgggaat |
216 |
Q |
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| T |
35902498 |
caaattagattcaagagttacctgcaaaggcagaggtaattgctaggtcagataaaactggaattgagatgtttaaatatggagatcatattatgggaat |
35902399 |
T |
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| Q |
217 |
ccaaggtcatccagagtactctaaagatattcttttgtttc |
257 |
Q |
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| T |
35902398 |
ccaaggtcatccagagtactctaaagatattcttttgtttc |
35902358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 37024448 - 37024571
Alignment:
| Q |
130 |
agagttacctgcaaaggcagaggtaattgctaggtcagataaaactggaattgagatgtttaaatatggagatcatattatgggaatccaaggtcatcca |
229 |
Q |
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| T |
37024448 |
agagctacctgccaaggctgaagtgattgctaaatcagataagactggaattgagatgtttagatatggagatcacattatgggaattcaaggtcatcct |
37024547 |
T |
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| Q |
230 |
gagtactctaaagatattcttttg |
253 |
Q |
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| T |
37024548 |
gagtactctaaagacatccttttg |
37024571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 2052055 - 2051979
Alignment:
| Q |
146 |
gcagaggtaattgctaggtcagataaaactggaattgagatgtttaaatatggagatcatattatgggaatccaagg |
222 |
Q |
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| T |
2052055 |
gcagaggtaattggttggtcagaaaagactggaattgagatgtttaggtatggaaatcacatgttgggcatccaagg |
2051979 |
T |
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