View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_60 (Length: 273)
Name: NF1412_low_60
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 24543540 - 24543310
Alignment:
| Q |
26 |
gttaatcaatggttgataatatttactttgaactataattaaagtgagttattcacttaaaaggagttagatgcataaaaaatcaatacatgag--taca |
123 |
Q |
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| T |
24543540 |
gttaatcaatggttgataatatttactttgaactataattaaagtgagttattcacttaaaaggagttagatgcataaaaaatcaatacatgagagtaca |
24543441 |
T |
|
| Q |
124 |
atgtaccttcccatcgaatatggtgtttgggtttttcatttactggtttcttgtaaacttgtggtttctgtgaaagtgtagggttctctttctcctttcc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24543440 |
atgtaccttcccatcgaatatggtgtttgggtttttcatttactggtttcttgtaaacttgtggtttctgtgaaagtgtagggttctctttctcctttcc |
24543341 |
T |
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| Q |
224 |
cttgccaactttatcagaagagggtccaccc |
254 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
24543340 |
cttgccaactttatcagaagagggtccaccc |
24543310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24543586 - 24543541
Alignment:
| Q |
1 |
cacctctaatgtctaactttgatttgttaatcaatggttgataata |
46 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24543586 |
cacctctaatgtctaactttgatttgttaatcaatggttgataata |
24543541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 39421588 - 39421626
Alignment:
| Q |
5 |
tctaatgtctaactttgatttgttaatcaatggttgata |
43 |
Q |
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|||||| |||| ||||||||||||||||||||||||||| |
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| T |
39421588 |
tctaatatctacctttgatttgttaatcaatggttgata |
39421626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 3859408 - 3859436
Alignment:
| Q |
12 |
tctaactttgatttgttaatcaatggttg |
40 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3859408 |
tctaactttgatttgttaatcaatggttg |
3859436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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