View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1412_low_67 (Length: 255)
Name: NF1412_low_67
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_67 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 949761 - 949519
Alignment:
| Q |
1 |
tgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
949761 |
tgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgt |
949662 |
T |
|
| Q |
101 |
gacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
949661 |
gacaaacaacaatagttttaaccatgtttccatcaacaccttccaagggcacagagtaaacttcggttgaatcagttttatgacagtaaaaaactgtgta |
949562 |
T |
|
| Q |
201 |
agggtaattctctttgtgacacacaatagtattgttcatctca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
949561 |
agggtaattctctttgtgacacacaatagttttgttcttctca |
949519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 942772 - 942530
Alignment:
| Q |
1 |
tgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
942772 |
tgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtgt |
942673 |
T |
|
| Q |
101 |
gacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcata |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
942672 |
gacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcata |
942573 |
T |
|
| Q |
201 |
agggtaattctctttgtgacacacaatagtattgttcatctca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
942572 |
agggtaattctctttgtgacacacaatagttttgttcttctca |
942530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 960733 - 960491
Alignment:
| Q |
1 |
tgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
960733 |
tgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtgt |
960634 |
T |
|
| Q |
101 |
gacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcata |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960633 |
gacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcata |
960534 |
T |
|
| Q |
201 |
agggtaattctctttgtgacacacaatagtattgttcatctca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
960533 |
agggtaattctctttgtgacacacaatagttttgttcttctca |
960491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 972042 - 971800
Alignment:
| Q |
1 |
tgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
972042 |
tgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtgt |
971943 |
T |
|
| Q |
101 |
gacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcata |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971942 |
gacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcata |
971843 |
T |
|
| Q |
201 |
agggtaattctctttgtgacacacaatagtattgttcatctca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
971842 |
agggtaattctctttgtgacacacaatagttttgttcttctca |
971800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 936852 - 936629
Alignment:
| Q |
1 |
tgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgt |
100 |
Q |
| |
|
|||||||| || |||| |||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
936852 |
tgatcctgaggaaggaagtgacaaactggaacagttccaggttgaacattgagcacttgaaaagccaaatgtttaggattccattgtgaagtatcagtgt |
936753 |
T |
|
| Q |
101 |
gacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcata |
200 |
Q |
| |
|
|||| ||| ||| || |||||| | |||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
936752 |
gacacacagcaacagctttaactctacttccatcaacaccttccaaaggcacagagtaaactttagttgaatcagttttatgacagtaaaaaactgcata |
936653 |
T |
|
| Q |
201 |
agggtaattctctttgtgacacac |
224 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
936652 |
agggtaactctctttgtgacacac |
936629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 419518 - 419748
Alignment:
| Q |
13 |
aggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaa |
112 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
419518 |
aggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaa |
419617 |
T |
|
| Q |
113 |
tagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctc |
212 |
Q |
| |
|
||| |||||| || |||||||| |||| || || |||||||||||| ||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
419618 |
tagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctc |
419717 |
T |
|
| Q |
213 |
tttgtgacacacaatagtattgttcatctca |
243 |
Q |
| |
|
|||||||||||||| || |||||| ||||| |
|
|
| T |
419718 |
tttgtgacacacaacagctttgttcttctca |
419748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 975643 - 975413
Alignment:
| Q |
13 |
aggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaa |
112 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
975643 |
aggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaa |
975544 |
T |
|
| Q |
113 |
tagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctc |
212 |
Q |
| |
|
||| |||||| || |||||||| |||| || || |||||||||||| ||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
975543 |
tagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctc |
975444 |
T |
|
| Q |
213 |
tttgtgacacacaatagtattgttcatctca |
243 |
Q |
| |
|
|||||||||||||| || |||||| ||||| |
|
|
| T |
975443 |
tttgtgacacacaacagctttgttcttctca |
975413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 910084 - 909871
Alignment:
| Q |
13 |
aggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaa |
112 |
Q |
| |
|
|||||||| |||| |||| ||| ||| |||||| |||||||||||||||||||||||||||| || |||||| ||| ||||||| ||| |||| | ||| |
|
|
| T |
910084 |
aggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtttaaggctccattgtgaagtatcagagtggcaaatagcaa |
909985 |
T |
|
| Q |
113 |
tagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctc |
212 |
Q |
| |
|
|| |||||| | |||||||| ||||||| || |||||||||||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
909984 |
cagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctgttttgtgacagtaaaaaactgcataagggtaattccg |
909885 |
T |
|
| Q |
213 |
tttgtgacacacaa |
226 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
909884 |
tttgtggcacacaa |
909871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 924602 - 924461
Alignment:
| Q |
28 |
ggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgt |
127 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||| ||| |||| | ||| || |||||| || |
|
|
| T |
924602 |
ggaacagttccaggttgaattttgagtacttgaaaagccaaatgtttaggactccattgtgaagtatcagagtggcaaatagcaacagctttaactttgg |
924503 |
T |
|
| Q |
128 |
ttccatcaacaccttctaagggcacagagtaaacttcagttg |
169 |
Q |
| |
|
|||||||||||||||| | |||| | ||||||||| ||||| |
|
|
| T |
924502 |
ttccatcaacaccttccataggcaaatagtaaactttagttg |
924461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 11053 - 10823
Alignment:
| Q |
13 |
aggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaa |
112 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
11053 |
aggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaa |
10954 |
T |
|
| Q |
113 |
tagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctc |
212 |
Q |
| |
|
||| |||||| || |||||||| |||| || || |||||||||||| ||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
10953 |
tagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctc |
10854 |
T |
|
| Q |
213 |
tttgtgacacacaatagtattgttcatctca |
243 |
Q |
| |
|
|||||||||||||| || |||||| ||||| |
|
|
| T |
10853 |
tttgtgacacacaacagctttgttcttctca |
10823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University