View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_7 (Length: 507)
Name: NF1412_low_7
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 3 - 407
Target Start/End: Original strand, 7470955 - 7471359
Alignment:
| Q |
3 |
catgtcgaagaatattaaacagagacagttttataaaaacaaaagttcagtgcaacacaaaaatgcttatactaaaagaatgacttcgtaaatcaggatt |
102 |
Q |
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| T |
7470955 |
catgtagaaaaatattaaacattgacagttttataaaaacaaaagttcagtgcaacacaaaaatgcttatactaaaagaatgacttcgtaaatcaggatc |
7471054 |
T |
|
| Q |
103 |
ccaaattgcttgacagtaaaaagaatgtttggtacagctaaaaagaaaaatgtgagaagaacttgaacaatggcacaaatgtaattttacctgataattg |
202 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7471055 |
ccaaattgcttgacagtaaaaaaaatgtttggtgcagctaaaaagaaaaatgcgagaagaacttgaacaatggcacaaatgtaattttacctgataattg |
7471154 |
T |
|
| Q |
203 |
tctgcggtgtcaaattggattcccatatttggttcaggattgatcccttccaggttgataagaacttcgtaatcctctctgtttcagaagaaaatccagc |
302 |
Q |
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| T |
7471155 |
tctgcggtgtcaaattggattcccatatttggttcaggattgatcccttccaggttgataagaacttcgtaatcctctctgtttccgaagaaaatccagc |
7471254 |
T |
|
| Q |
303 |
agatcccaccaaaaccaagtgctgtacgtgctctgggtgctacacataaatattaaaagatatatcagaataataattattatctttttgcaagagaaaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
7471255 |
agatcccaccaaaaccaagtgctgtacgtgctctgggtgctacacataaatattaaaagatatatcagaataataagtattatctttttgaaagagaaaa |
7471354 |
T |
|
| Q |
403 |
gggag |
407 |
Q |
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| T |
7471355 |
gggag |
7471359 |
T |
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