View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1412_low_73 (Length: 250)
Name: NF1412_low_73
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_73 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 13446673 - 13446451
Alignment:
| Q |
28 |
gtttaagttatgcagaacattattttacaaatgaagttctgtaacctttgttcttatattgtggactgaattcttatgttttcattagcaaagaaagaag |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
13446673 |
gtttaagttatgcagaacattattttacaaatgaagttctttaacctttattcttatattgtggactgaattctcatgttttcattaacaaagaaagaag |
13446574 |
T |
|
| Q |
128 |
gacccatattctacaagatttcaacaaagaatgatcttaaaagtggaagaatgaagagaatgtaccatagacttcatgtgtttggataaagttgacttta |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446573 |
gacccatattctacaagatttcaacaaagaatgatcttaaaagtggaagaatgaagagaatgtaccatagacttcatgtgtttggataaagttgacttta |
13446474 |
T |
|
| Q |
228 |
tgtttcaaatggacaaggaattt |
250 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13446473 |
tgtttcaaatggacaaggaattt |
13446451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 13446742 - 13446704
Alignment:
| Q |
11 |
cagagacaataaatgaagtttaagttatgcagaacatta |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446742 |
cagagacaataaatgaagtttaagttatgcagaacatta |
13446704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University