View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_75 (Length: 250)
Name: NF1412_low_75
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 27568147 - 27568384
Alignment:
| Q |
2 |
cttcaaactcttaagacccgtaacataatagtaagttgaccctaattgtctaatnnnnnnntgattccttccacaagattcagctttcaaaatctaaggc |
101 |
Q |
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| T |
27568147 |
cttcaaactcttaagacccgtaacataatagtaagttgaccctaattgtctaataaaaaaatgattccttccacaagattcagctttcaaaatctaaggc |
27568246 |
T |
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| Q |
102 |
catcaacatttcaagagtaaaactattttgcctaaatatggcaacaacttgagtttgagccaacaaacaaaatctaaacaagagattctctaagaaatta |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27568247 |
catcaacatttcaagagtaaaactattttgcctaaatatggcaacaacttgagtttgagccaacaaacaaaatctaaacaagagattctctaagaaatta |
27568346 |
T |
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| Q |
202 |
tgtaccagctgttccagaaaatctttctgatacttcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27568347 |
tgtaccagctgttccagaaaatctttctgatacttcat |
27568384 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 45756566 - 45756606
Alignment:
| Q |
196 |
aaattatgtaccagctgttccagaaaatctttctgatactt |
236 |
Q |
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| T |
45756566 |
aaatgatgtaccagctgttccagaaaatctttttgagactt |
45756606 |
T |
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