View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_79 (Length: 249)

Name: NF1412_low_79
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_low_79
NF1412_low_79
[»] chr4 (10 HSPs)
chr4 (1-232)||(8036227-8036455)
chr4 (2-206)||(8410721-8410925)
chr4 (7-206)||(8041667-8041866)
chr4 (2-203)||(9138857-9139058)
chr4 (2-195)||(8416374-8416567)
chr4 (2-94)||(8356480-8356572)
chr4 (2-94)||(8403670-8403762)
chr4 (2-94)||(43144839-43144931)
chr4 (25-94)||(8359526-8359595)
chr4 (142-195)||(8359437-8359490)
[»] chr7 (2 HSPs)
chr7 (2-94)||(5476209-5476301)
chr7 (122-195)||(5476320-5476393)
[»] chr2 (1 HSPs)
chr2 (134-208)||(33084019-33084093)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8036455 - 8036227
Alignment:
Q  1 ctgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036455 ctgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggt 8036356  T
Q  101 ctggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgc 200  Q
    |||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036355 ctggagttacatcttcaaatg---cttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgc 8036259  T
Q  201 ttggatgcgtggtggtgaagaagagctatata 232  Q
    ||||||||||||||||||||||||||||||||    
T  8036258 ttggatgcgtggtggtgaagaagagctatata 8036227  T

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Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 8410721 - 8410925
Alignment:
Q  2 tgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggtc 101  Q
    |||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  8410721 tgagttttcttgaagcacgagatgctgttcggacttgcatcttgtctaaacggtggaaggatctttgcaaacgcctcactactctcacatatactccgtc 8410820  T
Q  102 tggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgct 201  Q
    |  | |||||| |||  |||| |||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8410821 tatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtccagtagagatcactcatattcactgcttaatcttactattaatgct 8410920  T
Q  202 tggat 206  Q
    |||||    
T  8410921 tggat 8410925  T

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Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 8041866 - 8041667
Alignment:
Q  7 tttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggtctggag 106  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |     
T  8041866 tttcttgaagcacgagatgctgttcggacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactccgtctccac 8041767  T
Q  107 atacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgcttggat 206  Q
     |||||||||  |||| || | | || |||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||    
T  8041766 ttacatcttcgtatgaaagatctaagaaatttatgtcttgggttctgtccagtagagatcactcatattccctacttaatcttactattgatgcttggat 8041667  T

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Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 9139058 - 9138857
Alignment:
Q  2 tgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggtc 101  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |      
T  9139058 tgagttttcttgaagcacaagatgctgttcggacttgcatcttgtctaaacggtggaaggatctttgcaaatgcctcactactctcacatatactccggt 9138959  T
Q  102 tggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgct 201  Q
    |  |  ||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||  |||||    
T  9138958 tttacttacatcttcgaatgatagttttgagcaatttatgtcttgggttctgtcgagtagagatcactcatcttcactacttaatcttactatccatgct 9138859  T
Q  202 tg 203  Q
    ||    
T  9138858 tg 9138857  T

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Target: chr4; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 8416374 - 8416567
Alignment:
Q  2 tgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggtc 101  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  8416374 tgagttttcttgaagcacgagatgctgttcggacttgtatcttgtctaaacggtggaaggatctttgcaaacgcctcactactctcacatatactccgtc 8416473  T
Q  102 tggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactatt 195  Q
    |  |  |||||||||  || || | | | || |||||||||||||||||||||||| ||||||||| |||||||| || |||||||| ||||||    
T  8416474 tctatttacatcttcgtattatgggtataagaaatttatgtcttgggttctgtccattagagatcattcatattccctacttaatctaactatt 8416567  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 8356572 - 8356480
Alignment:
Q  2 tgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatata 94  Q
    |||| |||||||||||| |||||| ||||| |||||| |||||||||||||| ||||||||||||||||||||| || ||| |||||||||||    
T  8356572 tgagttttcttgaagcagaagatgttgttcggacttgcatcttgtctaaacgatggaaggatctttgcaaacgcctccctattctcacatata 8356480  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 8403670 - 8403762
Alignment:
Q  2 tgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatata 94  Q
    |||| ||||||||||||| ||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||  ||||||||||| ||||||    
T  8403670 tgagttttcttgaagcacgagacgctgttcggacttgcatcttgtctaaacgatggaaggatctttgcaaacgtctcactactctcgcatata 8403762  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 43144931 - 43144839
Alignment:
Q  2 tgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatata 94  Q
    |||| ||||||||||||| ||| | |||||  ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||| |||||    
T  43144931 tgagttttcttgaagcacgagacgttgttcgaacttgcatcttgtctaagcgatggaaggatctttgcaaacgtgtcactactctcaaatata 43144839  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 8359595 - 8359526
Alignment:
Q  25 gctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatata 94  Q
    |||||||  ||||| |||||||||||||| ||||||||||||||||||||  || |||||||||||||||    
T  8359595 gctgttcgaacttgcatcttgtctaaacgatggaaggatctttgcaaacgtctccctactctcacatata 8359526  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 8359490 - 8359437
Alignment:
Q  142 tcttgggttctgtccaatagagatcactcatattcactgcttaatcttactatt 195  Q
    |||||||||| ||| | |||||||||||||| ||| || |||||||||||||||    
T  8359490 tcttgggttcggtctagtagagatcactcatgttccctacttaatcttactatt 8359437  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 5476209 - 5476301
Alignment:
Q  2 tgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatata 94  Q
    |||| ||||||||||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  5476209 tgagttttcttgaagcacgagatgctgttcggacttgcatcttgtctaaacgatggaaggatctttgcaaacgtctcactactctcacatata 5476301  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 5476320 - 5476393
Alignment:
Q  122 atagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactatt 195  Q
    |||||||| || | |||| ||||||||||||||| | ||||||||| |||| |||||||   ||||||||||||    
T  5476320 atagttttaagaactttaagtcttgggttctgtctagtagagatcaatcatgttcactgtggaatcttactatt 5476393  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 33084019 - 33084093
Alignment:
Q  134 aatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgcttggatgc 208  Q
    |||||||||||||| ||||||||| |||||||||||| | |||||| |||||||||||| || ||| ||||||||    
T  33084019 aatttatgtcttggattctgtccagtagagatcactcctgttcactacttaatcttactgttgatggttggatgc 33084093  T

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