View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1412_low_8 (Length: 500)
Name: NF1412_low_8
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 486574 - 487055
Alignment:
| Q |
1 |
caatctatagcccatgatgatgattcagttgatactaatgatgggattaatcgtacggctgcaggtgaacaaatgccatgtaggttaataaaatttgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
486574 |
caatctatagcccatgatgatgatccaattgatactaatgatgggattaatcgtacggctgcaggtgaacaaatgccatgtaggttaataaaatttgaag |
486673 |
T |
|
| Q |
101 |
agaattataagtttaaggattataaaaaaggtttagggttaggtggatttgttaaggaactnnnnnnnggttttgagagtgttgaatatgtgtatgtgtg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
486674 |
agaattgtaagtttaaggattataaaaaaggtttagggttaggtggatttgttaaggaactaaaaaaaggttttgagagtgttgaatatgtgtatgtgtg |
486773 |
T |
|
| Q |
201 |
gcatgctttatgtggttattggggtgggataagacctaatattgagggtctacctgaagctattgtggagaagcctaagttaaccgttggattggaaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
486774 |
gcatgctttatgtggttattggggtgggataagacctaatgttgagggtctacctgaagctattgtggagaagcctaagttaaccgttggattggaaact |
486873 |
T |
|
| Q |
301 |
actatggaggatttggctgttgataagattgttaataatggtgttgggttagttcctcctcatttggttgatcaaatgtatgaaggtattcactctcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
486874 |
actatggaggatttggctgttgataagattgttaataatggtgttgggttagttcctcctcatttggttgatcaaatgtatgaaggtattcactctcttt |
486973 |
T |
|
| Q |
401 |
tggaagagtctggaattgatggggtcaaggttgatgtcatccatgtaagtccttccattttaatttcacaaccacacatttt |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
486974 |
tggaagagtctggaattgatggggtcaaggttgatgtcatccatgtaagtccttccattttaatttcacaaccacacatttt |
487055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 43639593 - 43639541
Alignment:
| Q |
193 |
tatgtgtggcatgctttatgtggttattggggtgggataagacctaatattga |
245 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| || |||||| |||| |
|
|
| T |
43639593 |
tatgtgtggcatgctttttgtgggtattggggtgggattaggcctaatgttga |
43639541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 34698401 - 34698353
Alignment:
| Q |
67 |
gaacaaatgccatgtaggttaataaaatttgaagagaattataagttta |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| |||||||| |||| |
|
|
| T |
34698401 |
gaacaaatgccatgtaggctaataaaatatgaagaaaattataaattta |
34698353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 34698149 - 34698100
Alignment:
| Q |
304 |
atggaggatttggctgttgataagattgttaataatggtgttgggttagt |
353 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||| |||||||| |
|
|
| T |
34698149 |
atggaggatttagcggtggataagattgttaacaatggtgtagggttagt |
34698100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University