View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1412_low_84 (Length: 247)
Name: NF1412_low_84
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_84 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 24696833 - 24697046
Alignment:
| Q |
11 |
cagagaccaccgttgcaacgaagttgtaattgcggttcaaaaatcttacaacccattcttgacggcatgtgaatgaattccccaccattatccacatctg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24696833 |
cagagaccaccgttgcaacgaagttgtagttgcggttcaaaaatcttacaacccattcttgacggcatgtgaatgaattccacaccattatccacatctg |
24696932 |
T |
|
| Q |
111 |
tttaatgaaaaacgcctcagaggtattgctgcaacgaaccatttcagtataaatactgtaatcaactactttatggtcaactcccatttctactttgcgt |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| |
|
|
| T |
24696933 |
tttaatgaaaaacgcctcagagttattgatgcaacgaaccatttcagtataaatactgtaagcaactactttatggtcaactcccaatgctactttgcgg |
24697032 |
T |
|
| Q |
211 |
aaataccccacaag |
224 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
24697033 |
aaatactccacaag |
24697046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 24726651 - 24726767
Alignment:
| Q |
11 |
cagagaccaccgttgcaacgaagttgtaattgcggttcaaaaatcttacaacccattcttgacggcatgtgaatgaattccccaccattatccacatctg |
110 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||| |||| ||| || ||||||||||||| ||||||| ||| ||| || || ||||||| || |
|
|
| T |
24726651 |
cagagaccaccattgcaacgaagttgtaattgcgattcagaaatgttaaaagccattcttgacggtatgtgaacgaagtccaaactgttctccacatttg |
24726750 |
T |
|
| Q |
111 |
tttaatgaaaaacgcct |
127 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
24726751 |
tttaaagataaacgcct |
24726767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 24797424 - 24797463
Alignment:
| Q |
19 |
accgttgcaacgaagttgtaattgcggttcaaaaatctta |
58 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24797424 |
accgttgcaacgaagttgtaattggggttcaaaaatctta |
24797463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 24537839 - 24537802
Alignment:
| Q |
19 |
accgttgcaacgaagttgtaattgcggttcaaaaatct |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24537839 |
accgttgcaacgaagttgtaattgcggttcataaatct |
24537802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University