View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_85 (Length: 246)
Name: NF1412_low_85
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_85 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 16804363 - 16804589
Alignment:
| Q |
18 |
acttgaatgtcaaatgtagaacgcatatcattgattgtacacgttttctgaattagtctagtcattgttgttcattttcttcaaaatttctatttgtact |
117 |
Q |
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| T |
16804363 |
acttgaatgtcaaatgtagaacgcatatcattgattgtacacgttttctgaattattctagtcattgttgttcattttcttcaaaatttctatttgtact |
16804462 |
T |
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| Q |
118 |
ctgtgaagtaaataacgtctcattgtattatgttgacataagatcacaaacgtggccacacacgcttttgatagttgtcaccatcttttgaattttcttt |
217 |
Q |
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| T |
16804463 |
ctg--aagtaaataacgtctcattgtattatgttgacataagatcacaaacgtggccacacacgcttttgatagttgtcaccatctttcgaattttcttt |
16804560 |
T |
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| Q |
218 |
gcaattttcaaggtccttaatcatcaata |
246 |
Q |
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| T |
16804561 |
gcaattttcaaggtccttaatcatcaata |
16804589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 16843645 - 16843871
Alignment:
| Q |
18 |
acttgaatgtcaaatgtagaacgcatatcattgattgtacacgttttctgaattagtctagtcattgttgttcattttcttcaaaatttctatttgtact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843645 |
acttgaatgtcaaatgtagaacgcatatcattgattgtacacgttttctgaattattctagtcattgttgttcattttcttcaaaatttctatttgtact |
16843744 |
T |
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| Q |
118 |
ctgtgaagtaaataacgtctcattgtattatgttgacataagatcacaaacgtggccacacacgcttttgatagttgtcaccatcttttgaattttcttt |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16843745 |
ctg--aagtaaataacgtctcattgtattatgttgacataagatcacaaacgtggccacacacgcttttgatagttgtcaccatctttcgaattttcttt |
16843842 |
T |
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| Q |
218 |
gcaattttcaaggtccttaatcatcaata |
246 |
Q |
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| T |
16843843 |
gcaattttcaaggtccttaatcatcaata |
16843871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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