View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_9 (Length: 492)

Name: NF1412_low_9
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_low_9
NF1412_low_9
[»] chr4 (9 HSPs)
chr4 (17-394)||(753178-753555)
chr4 (178-394)||(727301-727517)
chr4 (40-121)||(48575478-48575559)
chr4 (448-480)||(727215-727247)
chr4 (448-480)||(753609-753641)
chr4 (80-118)||(38740287-38740325)
chr4 (54-127)||(24364096-24364169)
chr4 (86-123)||(43868276-43868313)
chr4 (80-120)||(2052054-2052094)
[»] scaffold0793 (2 HSPs)
scaffold0793 (17-394)||(5128-5505)
scaffold0793 (448-480)||(5559-5591)
[»] chr3 (7 HSPs)
chr3 (81-125)||(49158655-49158699)
chr3 (86-124)||(27481143-27481181)
chr3 (80-118)||(30958171-30958209)
chr3 (80-118)||(30973983-30974021)
chr3 (82-119)||(27825291-27825328)
chr3 (71-123)||(39657978-39658029)
chr3 (42-118)||(41115275-41115351)
[»] chr2 (4 HSPs)
chr2 (84-124)||(26627185-26627225)
chr2 (81-123)||(33502768-33502811)
chr2 (80-117)||(7630539-7630576)
chr2 (80-120)||(13238936-13238976)
[»] chr8 (3 HSPs)
chr8 (82-125)||(18355755-18355798)
chr8 (78-120)||(35550305-35550347)
chr8 (80-121)||(2031906-2031947)
[»] chr6 (3 HSPs)
chr6 (35-121)||(1499989-1500075)
chr6 (71-121)||(13428857-13428907)
chr6 (80-121)||(2915143-2915184)
[»] chr1 (2 HSPs)
chr1 (68-141)||(51363130-51363203)
chr1 (81-125)||(22548205-22548249)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 753178 - 753555
Alignment:
Q  17 attgttaactttaggtagatgtgttcaaacataaatcattttacattcgggtcattttaagtaaaaatcaattttacaaaatagattcattcaaaatcaa 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  753178 attgttaactttaggtaaatgtgttcaaacataaatcattttacattcgggtcattttaagtaaaaatcaattttacaaaatagattcattcaaaatcaa 753277  T
Q  117 tttttatcatccgtgaaccaaacatgcactaaattatgataggatcagagaaagcaaaagagcggaagctcatccaatgataaattccttccccgtcaca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  753278 tttttatcatccgtgaaccaaacatgcactaaattatgataggatcagagaaagcaaaagagcggaagctcatccaatgataaattccttccccgtcaca 753377  T
Q  217 gacaaattgagaaaaccccagaaagaaaaatcgaaactttaacacatggggattcaaattgtacatattcatatcaattagcataatttacaacataaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  753378 gacaaattgagaaaaccccagaaagaaaaatcgaaactttaacacatggggattcaaattgtgcatattcatatcaattagcataatttacaacataaaa 753477  T
Q  317 aacatgagaatgagagaaaattaattgaaacctgtttgcgaagggaatcccatgaagtagttggtacctccatggctg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  753478 aacatgagaatgagagaaaattaattgaaacctgtttgcgaagggaatcccatgaagtagttggtacctccatggctg 753555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 178 - 394
Target Start/End: Complemental strand, 727517 - 727301
Alignment:
Q  178 gcggaagctcatccaatgataaattccttccccgtcacagacaaattgagaaaaccccagaaagaaaaatcgaaactttaacacatggggattcaaattg 277  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  727517 gcggaagctcatccaatgataaattccttccccgtcacatacaaattgataaaaccccataaataaaaatcgaaactttaacacatggggattcaaattg 727418  T
Q  278 tacatattcatatcaattagcataatttacaacataaaaaacatgagaatgagagaaaattaattgaaacctgtttgcgaagggaatcccatgaagtagt 377  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  727417 tgcatattcatatcaattagcataatttacaacataaaaaacatgagaatgagagaaaattaattgaaacctgtttgcgaagggaatcccatgaagtagt 727318  T
Q  378 tggtacctccatggctg 394  Q
    |||||||||||||||||    
T  727317 tggtacctccatggctg 727301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 48575478 - 48575559
Alignment:
Q  40 ttcaaacataaatcattttacattcgggtcattttaagtaaaaatcaattttacaaaatagattcattcaaaatcaattttt 121  Q
    |||||| ||||| ||||||||||||   ||||||| |  ||||||||||||||||||||  ||||||||||||| |||||||    
T  48575478 ttcaaaaataaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaattttt 48575559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 480
Target Start/End: Complemental strand, 727247 - 727215
Alignment:
Q  448 gtgatgaatctgacgacgatgatgattgttggt 480  Q
    |||||||||||||||||||||||||||||||||    
T  727247 gtgatgaatctgacgacgatgatgattgttggt 727215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 480
Target Start/End: Original strand, 753609 - 753641
Alignment:
Q  448 gtgatgaatctgacgacgatgatgattgttggt 480  Q
    |||||||||||||||||||||||||||||||||    
T  753609 gtgatgaatctgacgacgatgatgattgttggt 753641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 38740325 - 38740287
Alignment:
Q  80 aaaatcaattttacaaaatagattcattcaaaatcaatt 118  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  38740325 aaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 24364169 - 24364096
Alignment:
Q  54 attttacattcgggtcattttaagtaaaaatcaattttacaaaatagattcattcaaaatcaatttttatcatc 127  Q
    |||||||||||   ||| ||| ||| | ||||||||||||| |||  ||||||||||||||||||||| |||||    
T  24364169 attttacattcaaatcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttttgtcatc 24364096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 43868276 - 43868313
Alignment:
Q  86 aattttacaaaatagattcattcaaaatcaatttttat 123  Q
    |||||||||||||  |||||||||||||||||||||||    
T  43868276 aattttacaaaatcaattcattcaaaatcaatttttat 43868313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 2052094 - 2052054
Alignment:
Q  80 aaaatcaattttacaaaatagattcattcaaaatcaatttt 120  Q
    |||| |||||||||||||| |||||||| ||||||||||||    
T  2052094 aaaaacaattttacaaaattgattcatttaaaatcaatttt 2052054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 5128 - 5505
Alignment:
Q  17 attgttaactttaggtagatgtgttcaaacataaatcattttacattcgggtcattttaagtaaaaatcaattttacaaaatagattcattcaaaatcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5128 attgttaactttaggtagatgtgttcaaacataaatcattttacattcgagtcattttaagtaaaaatcaattttacaaaatagattcattcaaaatcaa 5227  T
Q  117 tttttatcatccgtgaaccaaacatgcactaaattatgataggatcagagaaagcaaaagagcggaagctcatccaatgataaattccttccccgtcaca 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5228 tttttatcatccatgaaccaaacatgcactaaattatgataggatcagagaaagcaaaagagcggaagctcatccaatgataaattccttccccgtcaca 5327  T
Q  217 gacaaattgagaaaaccccagaaagaaaaatcgaaactttaacacatggggattcaaattgtacatattcatatcaattagcataatttacaacataaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5328 gacaaattgagaaaaccccagaaagaaaaatcgaaactttaacacatggggattcaaattgtgcatattcatatcaattagcataatttacaacataaaa 5427  T
Q  317 aacatgagaatgagagaaaattaattgaaacctgtttgcgaagggaatcccatgaagtagttggtacctccatggctg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5428 aacatgagaatgagagaaaattaattgaaacctgtttgcgaagggaatcccatgaagtagttggtacctccatggctg 5505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 480
Target Start/End: Original strand, 5559 - 5591
Alignment:
Q  448 gtgatgaatctgacgacgatgatgattgttggt 480  Q
    |||||||||||||||||||||||||||||||||    
T  5559 gtgatgaatctgacgacgatgatgattgttggt 5591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 49158655 - 49158699
Alignment:
Q  81 aaatcaattttacaaaatagattcattcaaaatcaatttttatca 125  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||    
T  49158655 aaatcaattttacaaaatcaattcattcaaaatcaatttatatca 49158699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 27481181 - 27481143
Alignment:
Q  86 aattttacaaaatagattcattcaaaatcaatttttatc 124  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  27481181 aattttacaaaataaattcattcaaaatcaaattttatc 27481143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 30958171 - 30958209
Alignment:
Q  80 aaaatcaattttacaaaatagattcattcaaaatcaatt 118  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  30958171 aaaatcaattttacaaaatcaattcattcaaaatcaatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 30973983 - 30974021
Alignment:
Q  80 aaaatcaattttacaaaatagattcattcaaaatcaatt 118  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  30973983 aaaatcaattttacaaaatcaattcattcaaaatcaatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 27825328 - 27825291
Alignment:
Q  82 aatcaattttacaaaatagattcattcaaaatcaattt 119  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  27825328 aatcaattttataaaataaattcattcaaaatcaattt 27825291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 39658029 - 39657978
Alignment:
Q  71 ttttaagtaaaaatcaattttacaaaatagattcattcaaaatcaatttttat 123  Q
    |||||||||||| ||||||||||| |||  ||| |||||||||||||||||||    
T  39658029 ttttaagtaaaa-tcaattttacataatcaatttattcaaaatcaatttttat 39657978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 41115351 - 41115275
Alignment:
Q  42 caaacataaatcattttacattcgggtcattttaagtaaaaatcaattttacaaaatagattcattcaaaatcaatt 118  Q
    |||||||||| ||||||||||||   ||||| | ||  |||||||||| ||||||||  ||||||||| ||||||||    
T  41115351 caaacataaaccattttacattcaactcattgttagccaaaatcaattatacaaaatcaattcattcataatcaatt 41115275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 26627225 - 26627185
Alignment:
Q  84 tcaattttacaaaatagattcattcaaaatcaatttttatc 124  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  26627225 tcaattttacaaaataaattcattcaaaatcaaattttatc 26627185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 33502811 - 33502768
Alignment:
Q  81 aaatcaattttacaaaat-agattcattcaaaatcaatttttat 123  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  33502811 aaatcaattttacaaaatcaaattcattcaaaatcaatttttat 33502768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 7630539 - 7630576
Alignment:
Q  80 aaaatcaattttacaaaatagattcattcaaaatcaat 117  Q
    |||||||||||||||||||  |||||||||||||||||    
T  7630539 aaaatcaattttacaaaatcaattcattcaaaatcaat 7630576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 13238936 - 13238976
Alignment:
Q  80 aaaatcaattttacaaaatagattcattcaaaatcaatttt 120  Q
    |||||||||||||||||||  ||||| ||||||||||||||    
T  13238936 aaaatcaattttacaaaatgaattcaatcaaaatcaatttt 13238976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 18355798 - 18355755
Alignment:
Q  82 aatcaattttacaaaatagattcattcaaaatcaatttttatca 125  Q
    |||||||||||||||||  ||||| |||||||||||||||||||    
T  18355798 aatcaattttacaaaatcaattcactcaaaatcaatttttatca 18355755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 35550305 - 35550347
Alignment:
Q  78 taaaaatcaattttacaaaatagattcattcaaaatcaatttt 120  Q
    |||||||||||||||||||||  ||||| ||||||||||||||    
T  35550305 taaaaatcaattttacaaaatcaattcaatcaaaatcaatttt 35550347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 2031947 - 2031906
Alignment:
Q  80 aaaatcaattttacaaaatagattcattcaaaatcaattttt 121  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  2031947 aaaataaattttacaaaataaattctttcaaaatcaattttt 2031906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 1499989 - 1500075
Alignment:
Q  35 atgtgttcaaacataaatcattttacattcgggtcattttaagtaaaaatcaattttacaaaatagattcattcaaaatcaattttt 121  Q
    |||| ||||||||||||||| |||||| ||   ||  ||| ||  |||||||||||||||||||  ||||| |||||||||||||||    
T  1499989 atgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaattttt 1500075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 13428907 - 13428857
Alignment:
Q  71 ttttaagtaaaaatcaattttacaaaatagattcattcaaaatcaattttt 121  Q
    |||||| |||||||||||||||||||||  ||| ||||| |||||||||||    
T  13428907 ttttaactaaaaatcaattttacaaaattcatttattcacaatcaattttt 13428857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 2915184 - 2915143
Alignment:
Q  80 aaaatcaattttacaaaatagattcattcaaaatcaattttt 121  Q
    ||||| ||||||| |||||| |||||||||||||||||||||    
T  2915184 aaaatgaattttagaaaatatattcattcaaaatcaattttt 2915143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 51363130 - 51363203
Alignment:
Q  68 tcattttaagtaaaaatcaattttacaaaatagattcattcaaaatcaatttttatcatccgtgaaccaaacat 141  Q
    ||||||| ||| ||||||||||||||||||| ||||||||| |||| || |||| | |||   |||||||||||    
T  51363130 tcatttttagtcaaaatcaattttacaaaatcgattcattcgaaattaaattttgtgatcgcagaaccaaacat 51363203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 22548249 - 22548205
Alignment:
Q  81 aaatcaattttacaaaatagattcattcaaaatcaatttttatca 125  Q
    ||||||||||||||||||  ||||| | |||||||||||||||||    
T  22548249 aaatcaattttacaaaatcaattcacttaaaatcaatttttatca 22548205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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