View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_93 (Length: 243)
Name: NF1412_low_93
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_93 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 5829531 - 5829300
Alignment:
| Q |
14 |
cactgtagacacttataacaaatcatgagtttgttaaaataa--gttagataataagtcattgagtttatgctgctgggactagctggtttctaagttag |
111 |
Q |
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| T |
5829531 |
cactgtagacacgtataacaaatcatgagtttgttaaaataatggttagataataagtcattgagtttaggctactggtactagctggtttctaagttag |
5829432 |
T |
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| Q |
112 |
ttgactccatttaggttttactatatattctattgaaactttaaccttgttgtgttatggttttgatattattgaaaccctatctgtctcttttgttatt |
211 |
Q |
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| T |
5829431 |
ttgactccatttaggttttactatatattctattgaaactttaaccttgttgtgttatggttttaatattattgaaaccctaactgtctcttttgttatt |
5829332 |
T |
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| Q |
212 |
ctctattctctttaattttctacatttttaac |
243 |
Q |
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| T |
5829331 |
ctctattctctttaattttctatattgttaac |
5829300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 5827916 - 5827844
Alignment:
| Q |
121 |
tttaggttttactatatattctattgaaactttaaccttgttgtgttatggttttgatattattgaaacccta |
193 |
Q |
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| T |
5827916 |
tttaggttttgctatatattttattgcaactctagttttcttatgttatggttttgatattatttgaacccta |
5827844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 38603075 - 38603046
Alignment:
| Q |
26 |
ttataacaaatcatgagtttgttaaaataa |
55 |
Q |
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| T |
38603075 |
ttataacaaatcatgagtttgttaaaataa |
38603046 |
T |
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