View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_95 (Length: 241)
Name: NF1412_low_95
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_95 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 22901646 - 22901871
Alignment:
| Q |
1 |
aattttatgttagttataagtgatcaatttagagggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatggaacaagcga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22901646 |
aattatatgttagttataagtgatcaatttagagggtttgcataaactttggttttaaagaatgaaaaaaaattgaataaaacaaggatggaacaagcga |
22901745 |
T |
|
| Q |
101 |
ttagaacttctgaatttcttacgctaattatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22901746 |
ttagaacttctgaatttcttacgctaattatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaat |
22901845 |
T |
|
| Q |
201 |
aaccaagactaacagacaattgtttc |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
22901846 |
aaccaagactaacagacaattgtttc |
22901871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 22883716 - 22883838
Alignment:
| Q |
1 |
aattttatgttagttataagtgatcaatttagagggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatggaacaagcga |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22883716 |
aattatatgttagttataagtgatcaatttagagggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatggaaaaagcga |
22883815 |
T |
|
| Q |
101 |
ttagaacttctgaatttcttacg |
123 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
22883816 |
ttagaacttttgaatttcttacg |
22883838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 22883868 - 22883973
Alignment:
| Q |
121 |
acgctaattatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaat |
220 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22883868 |
acgctaattatcacattaagatgatgcaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaat |
22883967 |
T |
|
| Q |
221 |
tgtttc |
226 |
Q |
| |
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|||||| |
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|
| T |
22883968 |
tgtttc |
22883973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 22916597 - 22916699
Alignment:
| Q |
121 |
acgctaattatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaat |
220 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22916597 |
acgctaattatcacattaagatgatgcaatatgtctaaagcgtttatctaatgaacatttatccaaaatccagttacaataaccaagactaacagacaat |
22916696 |
T |
|
| Q |
221 |
tgt |
223 |
Q |
| |
|
||| |
|
|
| T |
22916697 |
tgt |
22916699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 22916466 - 22916567
Alignment:
| Q |
22 |
gatcaatttagagggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatggaacaagcgattagaacttctgaatttctta |
121 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
22916466 |
gatcaatttggagggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatggaaaaagcgattagaacttttgaatttctta |
22916565 |
T |
|
| Q |
122 |
cg |
123 |
Q |
| |
|
|| |
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|
| T |
22916566 |
cg |
22916567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 22982940 - 22982842
Alignment:
| Q |
128 |
ttatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaattgtttc |
226 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |
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| T |
22982940 |
ttatcacattaagatgatgtaataagtctaaagcgattatgtaatgaacatttatccaagatccagttacaataactaagattaatagacaattgtttc |
22982842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 23805468 - 23805566
Alignment:
| Q |
128 |
ttatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaattgtttc |
226 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |
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|
| T |
23805468 |
ttatcacattaagatgatgtaataagtctaaagcgattatgtaatgaacatttatccaagatccagttacaataactaagattaatagacaattgtttc |
23805566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 22963137 - 22963050
Alignment:
| Q |
35 |
ggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaagga-tggaacaagcgattagaacttctgaatttctta |
121 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||||||||||| ||||||||| || || ||| |||||| |||| |||||||||| |
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| T |
22963137 |
ggtttgcataaactttggatttaaggaatttaaataaattgaattaaacaaggattgtaaaaagtgattaggactttcgaatttctta |
22963050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 23825256 - 23825343
Alignment:
| Q |
35 |
ggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaagga-tggaacaagcgattagaacttctgaatttctta |
121 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||||||||||| ||||||||| || || ||| |||||| |||| |||||||||| |
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|
| T |
23825256 |
ggtttgcataaactttggatttaaggaatttaaataaattgaattaaacaaggattgtaaaaagtgattaggactttcgaatttctta |
23825343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 22983069 - 22982984
Alignment:
| Q |
37 |
tttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatgg-aacaagcgattagaacttctgaatttctta |
121 |
Q |
| |
|
||||||||||||| || |||| ||| |||||||||||||| |||||||||||| || ||| |||||| |||| |||||||||| |
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| T |
22983069 |
tttgcataaacttgggatttatgaaattaaaataaattgaattaaacaaggatggtaaaaagtgattaggactttcgaatttctta |
22982984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 23805339 - 23805424
Alignment:
| Q |
37 |
tttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatgg-aacaagcgattagaacttctgaatttctta |
121 |
Q |
| |
|
||||||||||||| || |||| ||| |||||||||||||| |||||||||||| || ||| |||||| |||| |||||||||| |
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|
| T |
23805339 |
tttgcataaacttgggatttatgaaattaaaataaattgaattaaacaaggatggtaaaaagtgattaggactttcgaatttctta |
23805424 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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