View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1412_low_97 (Length: 237)

Name: NF1412_low_97
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1412_low_97
NF1412_low_97
[»] chr5 (3 HSPs)
chr5 (1-229)||(29307401-29307630)
chr5 (69-153)||(29298373-29298454)
chr5 (168-221)||(29298444-29298496)
[»] chr2 (2 HSPs)
chr2 (1-31)||(32010021-32010051)
chr2 (1-33)||(8032880-8032912)
[»] chr7 (1 HSPs)
chr7 (1-33)||(39174179-39174211)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29307401 - 29307630
Alignment:
Q  1 ttttttacttataatttggaacaaagaaaataannnnnnngcttataagttgggacaaag-aagcatattattgtccttgagaaaatcaaaaactcatca 99  Q
    |||||| ||||||||||| ||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29307401 ttttttgcttataatttgaaacaaagaaaataatttttttgcttataagttgggacaaaggaagcatattattgtccttgagaaaatcaaaaactcatca 29307500  T
Q  100 tgttaatttggtagcacaaaagtagctaccatgttattatttcaagtgaaggtcaacttccttcaaaaaagtgaaggtcaactaattccattaagacatt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29307501 tgttaatttggtagcacaaaagtagctaccatgttattatttcaagtgaaggtcaacttccttcaaaaaagtgaaggtcaactaattccattaagacatt 29307600  T
Q  200 atttaaagctccttttacatatgatgatgt 229  Q
    ||||||||||||||||||||||||||||||    
T  29307601 atttaaagctccttttacatatgatgatgt 29307630  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 29298373 - 29298454
Alignment:
Q  69 tattgtccttgagaaaatcaaaaactcatcatgttaatttggtagcacaaaagtagctaccatgttattatttcaagtgaaggtc 153  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||    
T  29298373 tattgtccttgagaaaatcaaaaactcatcatgttaatttggtaccacaaaagtagctacc--gtt-ttatttcaagtgaaggtc 29298454  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 29298444 - 29298496
Alignment:
Q  168 aagtgaaggtcaactaattccattaagacattatttaaagctccttttacatat 221  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||||||| ||||    
T  29298444 aagtgaaggtccactaattcgattaagaca-tatttaaagctccttttatatat 29298496  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32010051 - 32010021
Alignment:
Q  1 ttttttacttataatttggaacaaagaaaat 31  Q
    |||||||||||||||||||||||||||||||    
T  32010051 ttttttacttataatttggaacaaagaaaat 32010021  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8032880 - 8032912
Alignment:
Q  1 ttttttacttataatttggaacaaagaaaataa 33  Q
    ||||||||||||||||||| |||||||||||||    
T  8032880 ttttttacttataatttgggacaaagaaaataa 8032912  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39174211 - 39174179
Alignment:
Q  1 ttttttacttataatttggaacaaagaaaataa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  39174211 ttttttacttatattttggaacaaagaaaataa 39174179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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