View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1412_low_99 (Length: 236)
Name: NF1412_low_99
Description: NF1412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1412_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 11715157 - 11715346
Alignment:
| Q |
21 |
gggagtattttaccaatattacataagctagattcaagtgaagataactcaatttcacaaattgatgagactcataaagacaactagaagcagttatact |
120 |
Q |
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| T |
11715157 |
gggagtattttaccaatattacataagctagattcaagtgaagataactcaatttcacaaattgatgagacttataaagacaactagaagcagttata-t |
11715255 |
T |
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| Q |
121 |
tttccagaaagttagttagattcagttacttgttatgtaagtcactctatcctataacagacatagcttagcttatgacggtgactaccta |
211 |
Q |
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| T |
11715256 |
tttccaaaaagttagttagatttagttacttgttatgtaagtcactctatcctataacagacatagcttagcttatgacgatgactaccta |
11715346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 11685919 - 11685727
Alignment:
| Q |
21 |
gggagtattttaccaatattacataagctagattcaagtgaagataactcaatttcacaaattgatgagactcataaa--gacaactagaagcagttata |
118 |
Q |
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| T |
11685919 |
gggagtattttaccaatattacataagctagattcaagtgaagataactcaatttcacaaattgatgagacttataaaaagacaactagaagcgattata |
11685820 |
T |
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| Q |
119 |
cttttccagaaagttagttagattcagttacttgttatgtaagtcactctatcctataacagacatagcttagcttatgacggtgactaccta |
211 |
Q |
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| T |
11685819 |
cttttccaaaaagttagttagatttagttacttgttatgtaagtcactctatcctataacagacatagcttagcttatgacgatgactaccta |
11685727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 27653446 - 27653414
Alignment:
| Q |
22 |
ggagtattttaccaatattacataagctagatt |
54 |
Q |
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| T |
27653446 |
ggagtattttagcaatattacataagctagatt |
27653414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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