View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14130_high_1 (Length: 630)
Name: NF14130_high_1
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14130_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 13 - 614
Target Start/End: Complemental strand, 40975287 - 40974680
Alignment:
| Q |
13 |
aatatttggccctgattccatgaaagtgttgaaatacaaaagcctgcaaagtcaacgacatataattattagtacaaaaaacatgaatagacatgtnnnn |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
40975287 |
aatatttggccctgattccatgaaagtgttgaaatacaaaagcctgcaaagtcaacgacatataagtattagtacaaaaaacaagaatagacatgtaaaa |
40975188 |
T |
|
| Q |
113 |
nnntaggcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccaccgttaagcttcttatacagg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40975187 |
aaataggcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccactgttaagcttcttatacagg |
40975088 |
T |
|
| Q |
213 |
taagcaagggcagtcga-------tccccacacgtaatcggaaataaaaattaatatcatgttacatttaagttcaatttacataaataaaaataaccat |
305 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40975087 |
taagcaagggcagtcgtcagtcggtccccacacgtaatcagaaataaaaattaatatcatgttacatttaagttcaatttacataaataaaaataaccat |
40974988 |
T |
|
| Q |
306 |
aaactccagtttacattnnnnnnnncatagtacaaaaaagtttaagttgtagaaatttactactccttcagacatgcaataggccacatgaagttggtac |
405 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40974987 |
aaactccagtttacat-aaaaaaaacatagtacaaaaaagtttaagttgtagaaatttactactccttcagacatgcaataggccacatgaagttggtac |
40974889 |
T |
|
| Q |
406 |
ttggtgagtaaatatacacttcatgtgggccaccgggatagtcattcaatggttgaggctccaccttcacttccacctgtgattgctcatcatcatctgc |
505 |
Q |
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| T |
40974888 |
ttggtgagtaaatatacacttcatgtgggccaccggaatagtcattcaatggttgaggctccaccttcacttccacctgtgattgctcatcatcatctgc |
40974789 |
T |
|
| Q |
506 |
attctccacctcttcctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacctgagatggttcagcaccatcaacacggcatccc |
605 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40974788 |
attctccacctctgcctcctcctcctccatatggtacttctcgggctggggctcaggctcgttcacctgagatggttcatcaccatcaacacggcatccc |
40974689 |
T |
|
| Q |
606 |
ccttcctct |
614 |
Q |
| |
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||||||||| |
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| T |
40974688 |
ccttcctct |
40974680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 24141956 - 24142062
Alignment:
| Q |
119 |
gcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccaccgttaagcttcttatacaggtaagca |
218 |
Q |
| |
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|||||||||||||||||| |||| |||||| |||||||| ||||||| || | || ||||||||||||||||| |||||||| | | ||||||| |||| |
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| T |
24141956 |
gcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctccatgtacaggtgagca |
24142055 |
T |
|
| Q |
219 |
agggcag |
225 |
Q |
| |
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||||||| |
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| T |
24142056 |
agggcag |
24142062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 24142906 - 24142959
Alignment:
| Q |
520 |
cctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacct |
573 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
24142906 |
cctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcacct |
24142959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 278 - 413
Target Start/End: Complemental strand, 9030673 - 9030540
Alignment:
| Q |
278 |
ttcaatttacataaataaaaataaccataaactccagtttacattnnnnnnnncatagtacaaaaaagtttaagttgtagaaatttactactccttcaga |
377 |
Q |
| |
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|||| ||||||||||||||||||| ||||| || |||||||||| ||||| ||||||||||| |||||||| || ||||||||||| ||||| |
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| T |
9030673 |
ttcagtttacataaataaaaataaacataaccttcagtttacat--aaaaaaacatagcacaaaaaagttaaagttgtaaaattttactactccatcaga |
9030576 |
T |
|
| Q |
378 |
catgcaataggccacatgaagttggtacttggtgag |
413 |
Q |
| |
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||||||||||||||||||||| ||||| | |||||| |
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| T |
9030575 |
catgcaataggccacatgaagatggtattgggtgag |
9030540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 573
Target Start/End: Complemental strand, 1771619 - 1771533
Alignment:
| Q |
489 |
tgctcatcatcatctgcattctccacctct--tcctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacct |
573 |
Q |
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||||||||||||| || ||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||| ||||| |
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| T |
1771619 |
tgctcatcatcatatgtgttctccacctccactcctcctcctcctccatataatattgctcgggctggggctcaggctcgtacacct |
1771533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 20626437 - 20626309
Alignment:
| Q |
26 |
gattccatgaaagtgttgaaatacaaaagcctgcaaagtcaacgacatataattattagtacaaaaaacatgaatagacatgtnnnnnnntaggcaattc |
125 |
Q |
| |
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|||||||| |||| ||||||| || || ||||| ||||||||| || ||||| |||||||| || ||||||||||| |||||| || ||||||| |
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| T |
20626437 |
gattccattaaagggttgaaaaaccaa-gcctggaaagtcaacaacctataagtattagtataagaaacatgaatatacatgtaaataaatatgcaattc |
20626339 |
T |
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| Q |
126 |
attattatttaaacatataacaaggtcaag |
155 |
Q |
| |
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| T |
20626338 |
attattatttatacttgtaacagggtcaag |
20626309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 18418568 - 18418462
Alignment:
| Q |
119 |
gcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccaccgttaagcttcttatacaggtaagca |
218 |
Q |
| |
|
||||||||||||| |||| || | ||||||||||||| ||||||| |||| ||||||||||||||||| ||| |||| ||||||||| |||| |
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| T |
18418568 |
gcaattcattattttttatacctgcgacaaggtcaagtatccagccaatcgtaaagtcttataatgggctccattgttgagctctctatacaggtgagca |
18418469 |
T |
|
| Q |
219 |
agggcag |
225 |
Q |
| |
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||||||| |
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|
| T |
18418468 |
agggcag |
18418462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 579
Target Start/End: Complemental strand, 42229414 - 42229179
Alignment:
| Q |
339 |
aaaaaagtttaagttgtagaaatttactactccttcagacatgcaataggccacatgaagttggtacttggtgagtaaatatacacttcatgtgggccac |
438 |
Q |
| |
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||||||||| ||||||| || |||||||||| ||||||| || ||| ||||| || | ||| |||||||||| | | | ||| ||||||||||||| |
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| T |
42229414 |
aaaaaagttaaagttgttaaatcttactactccctcagacaagcgatacgccacgtggacatggcacttggtgagcacaga--cacgtcatgtgggccac |
42229317 |
T |
|
| Q |
439 |
cgggatagtcattcaatggttgaggctccaccttcacttccacctgtgattgctcatcatcatctgcattctccacctcttcctcct---cctcctccat |
535 |
Q |
| |
|
|| ||||| ||| | |||||||||||||||| || |||| | |||||||||||||| | |||||| || ||| |||||| |||||| || |
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| T |
42229316 |
cgtgatagacatctagcggttgaggctccacct------ccccctgcggttgctcatcatcattttcattcttcagctccacctcctattcctccttcac |
42229223 |
T |
|
| Q |
536 |
atggtgcttctcgggctggggctcaggctcgttcacctgagatg |
579 |
Q |
| |
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|||||||| ||| || ||||||||| ||| |||||||||||||| |
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| T |
42229222 |
atggtgctactcaggttggggctcaagcttgttcacctgagatg |
42229179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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