View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14130_high_13 (Length: 253)
Name: NF14130_high_13
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14130_high_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 28382002 - 28382254
Alignment:
| Q |
1 |
acatctatagttaagctgaatacagaagacaatcaacaggtgaaactatcttgcttttggttaagtataattaattattcaaaattaaataaaataaatt |
100 |
Q |
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| T |
28382002 |
acatctatagttaagctgaatacagaagacaatcaacaggtgaaactatcttgcttttggttaagtataattaattattcaaaattaaataaattaaatt |
28382101 |
T |
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| Q |
101 |
ggttaattaggtttctttgtttggtgaactgaaacaagtgcttggtttttgaccttaacaaatattctttgacttacatatttttcagttggttattgac |
200 |
Q |
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| T |
28382102 |
ggttaattaggtttctttgtttggtgaactgaaacaagtgcttggtttttgaccttaacaaatattctttgacttacatatttttcagttggttattgac |
28382201 |
T |
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| Q |
201 |
aatggcattgtttctgtgactttgtcaagacctgaggggcacgtcattgcaat |
253 |
Q |
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| T |
28382202 |
aatggcattgtttctgtgactttgtcaagacccgaggggcacgtcattgcaat |
28382254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 28390652 - 28390752
Alignment:
| Q |
138 |
gtgcttggtttttgaccttaacaaatattctttgacttacatatttttcagttggttattgacaatggcattgtttctgtgactttgtcaagacctgagg |
237 |
Q |
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| T |
28390652 |
gtgcttggtttttgaccttaacaattattcttttacttataattttttcagttggttgttgataatggcattgtttctgtgtctatggcaagaccagagg |
28390751 |
T |
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| Q |
238 |
g |
238 |
Q |
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| T |
28390752 |
g |
28390752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 28413235 - 28413156
Alignment:
| Q |
148 |
tttgaccttaacaaatattctttgacttacatatttttcagttggttattgacaatggcattgtttctgtgactttgtcaa |
228 |
Q |
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| T |
28413235 |
tttgactttaacaattattctttgactttaat-tttttcagttagttgttgacaatggcattgtttctgtcactttgtcaa |
28413156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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