View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14130_high_2 (Length: 593)
Name: NF14130_high_2
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14130_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 380 - 579
Target Start/End: Original strand, 12310524 - 12310723
Alignment:
| Q |
380 |
gaccattgatgtggtcccttcgggaagattcgtcttagtggtctcttcgaggggaaatcatcctttgagactcagccaaagcagaagagagcaactcatt |
479 |
Q |
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| T |
12310524 |
gaccattggtgtggtcccttcaggaagattcgtcttagtggtctcttcgaggggaaatcatcctttgagactcagccaaagcagaagagagcaactcatt |
12310623 |
T |
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| Q |
480 |
ctagatcagtgaagactatgagttatgtctctaatcttgcatcagaacttcctcctcttccaaataaacaaaagatcgggaagttggtacttcaacctga |
579 |
Q |
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| T |
12310624 |
ctagatcaatgaagactatgagttatgtctctaatcctgcatcagaacttcctcctcttccaaataaacaaaagaccgggaagttggtacttcaacctga |
12310723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 204 - 366
Target Start/End: Original strand, 12320162 - 12320313
Alignment:
| Q |
204 |
aataagagaagcaccaaactaccactctcatcttttatcctacaaatgttaattgaaatgctaagaaattgggttatacgtctgccaaagaacgaagcca |
303 |
Q |
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| T |
12320162 |
aataagagaagcaccaaaataccactctcatcttttatcctacaaatgttaattcaa-----------ttgggttatacctcttccaaagaacaaagcca |
12320250 |
T |
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| Q |
304 |
agtgacacatgtttaagagtaaaaaggtaaaaccagcactgttggtgcatatatgctggtgtc |
366 |
Q |
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| T |
12320251 |
agtgacacatgtttaagagtaaaaaggtaaaaccagcacggttggtgcatatatgctggtgtc |
12320313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 12319707 - 12319786
Alignment:
| Q |
98 |
atatacttgtattgtgtttgcttcgagtgtttacacaggacaaacaacaaagtggtgctctttaaagtgtcgaagttaaa |
177 |
Q |
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| T |
12319707 |
atatacttgtattgtgtttgcttccagtgtttacacaggacaaacaacaaagtggcgatctttaaagtgtcgaagttaaa |
12319786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 355
Target Start/End: Original strand, 6919736 - 6919878
Alignment:
| Q |
211 |
gaagcaccaaactaccactctcatcttttatcctacaaatgttaattgaaatgctaagaaattgggttatacgtctgccaaagaacgaagccaagtgaca |
310 |
Q |
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| T |
6919736 |
gaagcaccaaaatactaagttcatcttttattctacgaatgttaactgaaacgct-agtaattggtttatacacttaccaaaaaactaagccaagtggca |
6919834 |
T |
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| Q |
311 |
catgtttaagagtaaaaaggtaaaaccagcactgttggtgcatat |
355 |
Q |
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| T |
6919835 |
catg-ttaaaagaaaaaaggtaaaactagcactattagtgcatat |
6919878 |
T |
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