View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14130_high_5 (Length: 434)
Name: NF14130_high_5
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14130_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 3485955 - 3485674
Alignment:
| Q |
17 |
atcacatttaagaaatagatggtcataacaattgcatcctcccacaaaaagttgcacgttattcaaaagcacaccctacctaattaagttatttgttgta |
116 |
Q |
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| T |
3485955 |
atcacatttaaaaaatagatggtcataacaactgcatccttccacaaaaagttgcacgttattcagaagcacaccctacctaattaagttatttgttgta |
3485856 |
T |
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| Q |
117 |
ggaataagattccaaagcagtcctcaagcaaaaaggtttatcttcaaaagaactactttgtgccaaataatgttagacatttaagaagtaatggtgtttt |
216 |
Q |
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| T |
3485855 |
ggaataagattccaaagcagtcctcaaacaaaaaggtttaccttcaaaagaactgctttgtgccaaataatgttagacatttaagaagtaatggtgtttt |
3485756 |
T |
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| Q |
217 |
tcatcttggacaagtagttataaacaccactaacaataaaggtggtaattacttgtatggatttgaccttataaaatccaat |
298 |
Q |
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| T |
3485755 |
tcatcttggacaagtagttataaacaccactaacaataaaggtggtaattacttatatggatttgaccttataaaatccaat |
3485674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 283 - 416
Target Start/End: Complemental strand, 3485649 - 3485517
Alignment:
| Q |
283 |
ccttataaaatccaataataaagaatcttggtaaatgaatcaattcatatggttgatcattgatgaacttaaggttggatcgtccggtcaacaagtcaat |
382 |
Q |
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| T |
3485649 |
ccttataaaatccaataataaagaatcttggtaaaagaatcaattcatatggttgatcattgatgaacttaaggttggatcgtctggtcaacaagtcaat |
3485550 |
T |
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| Q |
383 |
gccaagtgatcaagaataccaagccaattgtatt |
416 |
Q |
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| T |
3485549 |
g-caagtcatgaagaataccaagccaattgtatt |
3485517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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