View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14130_high_8 (Length: 322)
Name: NF14130_high_8
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14130_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 55076914 - 55076608
Alignment:
| Q |
1 |
attgtgattgtggttttgattggagcggaatgtcttctacgtaatatagagcaaaggaagaaacgagagcgagaaggaatattgataagaagaaacatgt |
100 |
Q |
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| T |
55076914 |
attgtgattgtggttttgattggagcggaatgtcttcaacgtaatatagagcaaaggaagaaacgagagcgagaaggaatattgataagaagaaacatgt |
55076815 |
T |
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| Q |
101 |
tttgagattagcgcaaaagacatcgcaagctttagtttgggtgaaaggaaacatgtgatagagtttgctgaaagagccggcggcataaccaaggatattt |
200 |
Q |
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| T |
55076814 |
tttgagattagcgcaaaagacatcgcaagctttagtttgggtgaaaggaaacatgtgatagagtttgctgaaagagccggcggcataaccaaggatattt |
55076715 |
T |
|
| Q |
201 |
cccacggccatgaagaaagagaacatggcattgcccattctcattcgacggtgatcaccggcagcaaggtcaccaaggaaggcacgacatggtccttgaa |
300 |
Q |
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| T |
55076714 |
cccacggccatgaagaaagagaacatggcattgcccattctcattctacggtgatcaccggcagcaaggtcaccaaggaaggcacgacagggtccttgaa |
55076615 |
T |
|
| Q |
301 |
gcatatt |
307 |
Q |
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| T |
55076614 |
gcatatt |
55076608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 15125312 - 15125445
Alignment:
| Q |
174 |
gagccggcggcataaccaaggatatttcccacggccatgaagaaagagaacatggcattgcccattctcattcgacggtgatcaccggcagcaaggtcac |
273 |
Q |
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| T |
15125312 |
gagccagcagcataaccaaggacattaccgacggccatgaaaaaagagaacatcccattgccaattctcattcgacggtgatcaccaccagcgaggtcac |
15125411 |
T |
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| Q |
274 |
caaggaaggcacgacatggtccttgaagcatatt |
307 |
Q |
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| T |
15125412 |
caatgaaggcacgacaaggtccttgaagcatatt |
15125445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 43665606 - 43665688
Alignment:
| Q |
129 |
gctttagtttgggtgaaaggaaacatgtgatagagtttgctgaaagagccggcggcataaccaaggatatttcccacggccat |
211 |
Q |
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||||| |||| |||||| ||||||| |||| ||||||||||| ||| |||||||| ||||| ||||| || || |||||||| |
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| T |
43665606 |
gcttttgttttggtgaacggaaacacgtgaaagagtttgctgtaagcaccggcggcgtaaccgaggatgttaccgacggccat |
43665688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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