View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14130_high_9 (Length: 310)
Name: NF14130_high_9
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14130_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 40 - 296
Target Start/End: Complemental strand, 40093094 - 40092838
Alignment:
| Q |
40 |
tgaaactattctaaaaggcctggctaaaagaacagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaag |
139 |
Q |
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| T |
40093094 |
tgaaactattctaaaaggcctggctaaaagaacagcctccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaag |
40092995 |
T |
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| Q |
140 |
ttggtgagaacaaattcatttccaacaaaccaggtgtgattacctcctcatcctgatcagaattctttccaaaatattcagcttgaaagtactgatacca |
239 |
Q |
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| T |
40092994 |
ttggtgagagcaaattcaattccaacaaactaggggttattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgatacca |
40092895 |
T |
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| Q |
240 |
gctattagtagtactcactggctctaatggaggggacccttcaacactgtctttgtt |
296 |
Q |
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| T |
40092894 |
gctattagtagtactcactggctctaatggaggggacacttcaacactgtctttgtt |
40092838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 66 - 296
Target Start/End: Complemental strand, 40125540 - 40125310
Alignment:
| Q |
66 |
aaagaacagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaac |
165 |
Q |
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| T |
40125540 |
aaagagcagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaac |
40125441 |
T |
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| Q |
166 |
aaaccaggtgtgattacctcctcatcctgatcagaattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggctcta |
265 |
Q |
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| T |
40125440 |
aaactaggggttattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggctcta |
40125341 |
T |
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| Q |
266 |
atggaggggacccttcaacactgtctttgtt |
296 |
Q |
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| T |
40125340 |
atggaggggacacttcaacagtgtctttgtt |
40125310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 66 - 291
Target Start/End: Complemental strand, 40121888 - 40121663
Alignment:
| Q |
66 |
aaagaacagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaac |
165 |
Q |
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||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40121888 |
aaagaacagcttccaaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaac |
40121789 |
T |
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| Q |
166 |
aaaccaggtgtgattacctcctcatcctgatcagaattctttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggct |
262 |
Q |
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| T |
40121788 |
aaactaggtgttattacctccttttcc---tcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggca |
40121692 |
T |
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| Q |
263 |
ctaatggaggggacccttcaacactgtct |
291 |
Q |
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||||||||| |||| |||||||| ||||| |
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| T |
40121691 |
ctaatggagaggacacttcaacattgtct |
40121663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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