View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14130_low_15 (Length: 247)

Name: NF14130_low_15
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14130_low_15
NF14130_low_15
[»] chr1 (2 HSPs)
chr1 (1-112)||(7503653-7503763)
chr1 (111-173)||(5304737-5304798)
[»] chr2 (1 HSPs)
chr2 (111-173)||(7428531-7428592)
[»] scaffold0014 (1 HSPs)
scaffold0014 (148-177)||(198376-198405)
[»] chr7 (1 HSPs)
chr7 (111-169)||(7390681-7390739)
[»] chr5 (1 HSPs)
chr5 (111-139)||(40223692-40223720)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 7503763 - 7503653
Alignment:
Q  1 tatgatagatatgataagcaagtgatatgatagaaagagagaaatggagaaaatgagtggttaaatgggtgtaagaaaagtgaaggtgtaaacatataaa 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  7503763 tatgatagatatgataagcaagtgatatgataggaagagagaaatggagaaaatgagtggttaaatgggtgtaagaaaagtgaaggtgtaaacacat-aa 7503665  T
Q  101 gggttggtaaaa 112  Q
    ||||||||||||    
T  7503664 gggttggtaaaa 7503653  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 5304737 - 5304798
Alignment:
Q  111 aaccatttcatacaatttttggtgacaacnnnnnnncctctcttttcattgattaaaaacaat 173  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  5304737 aaccatttcatacaatttttggtgacaacttttttt-ctctcttttcattgattaaaaacaat 5304798  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 7428592 - 7428531
Alignment:
Q  111 aaccatttcatacaatttttggtgacaacnnnnnnncctctcttttcattgattaaaaacaat 173  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  7428592 aaccatttcatacaatttttggtgacaacttttttt-ctctcttttcattgattaaaaacaat 7428531  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 198376 - 198405
Alignment:
Q  148 ctctcttttcattgattaaaaacaatagag 177  Q
    ||||||||||||||||||||||||||||||    
T  198376 ctctcttttcattgattaaaaacaatagag 198405  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 7390681 - 7390739
Alignment:
Q  111 aaccatttcatacaatttttggtgacaacnnnnnnncctctcttttcattgattaaaaa 169  Q
    |||||||||||||||||||||||||||||        ||||||||| ||||||||||||    
T  7390681 aaccatttcatacaatttttggtgacaacttctttttctctctttttattgattaaaaa 7390739  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 40223692 - 40223720
Alignment:
Q  111 aaccatttcatacaatttttggtgacaac 139  Q
    |||||||||||||||||||||||||||||    
T  40223692 aaccatttcatacaatttttggtgacaac 40223720  T

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