View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14130_low_3 (Length: 586)
Name: NF14130_low_3
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14130_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 563
Target Start/End: Complemental strand, 389660 - 389141
Alignment:
| Q |
20 |
tacctgtagaaaattactgtttctaacttgaggaaaatcatctttaatatacaaaagagctcctgatatgacaccggtgtcgtaaccgaagagaagacca |
119 |
Q |
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| T |
389660 |
tacctgtagaaaattactgtttctaacttgaggaaaatcatctttaatatacaaaagagctcctgatatgacaccggtgtcgtaaccgaagagaagacca |
389561 |
T |
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| Q |
120 |
ccaataccggcgacagcagcgaggccgagaatgtaaggatttttgaagaaagacatcttacgatcaggatgcatatctaagtaacctgaacttcccggtg |
219 |
Q |
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| T |
389560 |
ccaataccggcgacagcagcaaggccgagaatgtaaggatttttgaagaaagacatcttacgatcaggatgcatatctaagtaacctgaacttcccggtg |
389461 |
T |
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| Q |
220 |
tcgactgcatagctatcggaaccgtcatcttcttctgattctattctgatttcaaatctactacagaaacaaatgattgcttatagttgaacgcacacaa |
319 |
Q |
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| T |
389460 |
tcgactgcatagctatcggaaccgtcatc--------------ttctgatttcaaatctactacagagacaaatgattgattatagttgaacgcacacaa |
389375 |
T |
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| Q |
320 |
ctcaaaacagaaacagagaagaagcagtaaataaattattattttattttatt----taataaataaaatgggaggcaatgatannnnnnnnccaaaaat |
415 |
Q |
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| T |
389374 |
ct-------gaaactgagaagaagcactaaatgaattattattttatttatttaacataataaataaaatgggaggcaatgata-tttttttccaaaaat |
389283 |
T |
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| Q |
416 |
tgagcacgagagtgatgtgatgtgatatgatatatgagacagctgtcagctgtataaccacttaccgacgtgtcttcaaattacttactg----gataga |
511 |
Q |
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| T |
389282 |
tgagcacgagattgatgtgatg----------tatgagacagctgtcagctgtataaccacttaccgacgtgtcttcaaattacttactggatcgataga |
389193 |
T |
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| Q |
512 |
taatccatctcaatcatcaacaataatctcattacgactttctttctttttt |
563 |
Q |
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| T |
389192 |
taatccatctcaatcatcaacaataatttcattacgactttctttctttttt |
389141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 52772627 - 52772699
Alignment:
| Q |
117 |
ccaccaataccggcgacagcagcgaggccgagaatgtaaggatttttgaagaaagacatcttacgatcaggat |
189 |
Q |
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| T |
52772627 |
ccaccaataccagcgacagcagcgagaccgaggatataaggattcttaaaaaaagacattttgcgttcaggat |
52772699 |
T |
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