View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14130_low_4 (Length: 503)

Name: NF14130_low_4
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14130_low_4
NF14130_low_4
[»] chr8 (15 HSPs)
chr8 (198-484)||(23770601-23770887)
chr8 (15-184)||(23770919-23771088)
chr8 (245-484)||(5003927-5004166)
chr8 (20-284)||(5019317-5019594)
chr8 (15-93)||(23771082-23771160)
chr8 (241-321)||(5004165-5004245)
chr8 (209-284)||(5004301-5004376)
chr8 (258-312)||(5555626-5555680)
chr8 (258-299)||(5019197-5019238)
chr8 (27-93)||(5019593-5019656)
chr8 (28-93)||(5004865-5004927)
chr8 (248-285)||(16426624-16426661)
chr8 (49-93)||(5005005-5005049)
chr8 (15-73)||(5004813-5004871)
chr8 (27-56)||(5019799-5019828)
[»] scaffold0275 (9 HSPs)
scaffold0275 (15-184)||(20950-21119)
scaffold0275 (247-369)||(6827-6949)
scaffold0275 (247-369)||(12464-12586)
scaffold0275 (253-312)||(6758-6817)
scaffold0275 (209-284)||(21153-21228)
scaffold0275 (15-60)||(11670-11715)
scaffold0275 (253-312)||(12395-12454)
scaffold0275 (253-302)||(21302-21351)
scaffold0275 (27-93)||(11610-11676)
[»] chr4 (1 HSPs)
chr4 (258-291)||(46302991-46303024)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 198 - 484
Target Start/End: Complemental strand, 23770887 - 23770601
Alignment:
Q  198 aggtcatctcattccctgttctttcatcatcacttcggctcgcatcagcagccacagccctatcagcctccaactcttccttcttctgtaaagctaaagc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23770887 aggtcatctcattccctgttctttcatcatcacttcggctcgcatcagcagccacagccctatcagcctccaactcttccttcttctgtaaagctaaagc 23770788  T
Q  298 cttgtttcgacccttttcaatggcggccaaaatagcaacctccatctcttcaaaagctaaagcctcagccgcaatagcaacctccaactcttctaaagct 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23770787 cttgtttcgacccttttcaatggcggccaaaatagcaacctccatctcttcaaaagctaaagcctcagccgcaatagcaacctccaactcttctaaagct 23770688  T
Q  398 aaagcctcaacttgagattgcccttcaaaggcctttcgaaggctttcaagcctttcataaggctgatgagatttatgaaatgcagcc 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23770687 aaagcctcaacttgagattgcccttcaaaggcctttcgaaggctttcaagcctttcataaggctgatgagatttatgaaatgcagcc 23770601  T

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Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 23771088 - 23770919
Alignment:
Q  15 cataggcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaacacataaataa 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23771088 cataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaacacataaataa 23770989  T
Q  115 ctcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgagc 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23770988 ctcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgagc 23770919  T

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Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 245 - 484
Target Start/End: Complemental strand, 5004166 - 5003927
Alignment:
Q  245 gcagccacagccctatcagcctccaactcttccttcttctgtaaagctaaagccttgtttcgacccttttcaatggcggccaaaatagcaacctccatct 344  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||| |||| |||||| |||||||||||| |||||| ||    
T  5004166 gcagcctcagccatatcagcttccaactcttccttcttctgtaaagctaaagcctcgtctcgacctttttgaatggcagccaaaatagcagcctccaact 5004067  T
Q  345 cttcaaaagctaaagcctcagccgcaatagcaacctccaactcttctaaagctaaagcctcaacttgagattgcccttcaaaggcctttcgaaggctttc 444  Q
    |||| |||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||| |     
T  5004066 cttctaaagctaaagcctcagcctctaaagcaacctccaactcttctaaagctgaagcctcaacttgagattgtccttctaaggcctctcgaaggctctt 5003967  T
Q  445 aagcctttcataaggctgatgagatttatgaaatgcagcc 484  Q
    || ||||||| |||||||||||||||||||||||||||||    
T  5003966 aatcctttcaaaaggctgatgagatttatgaaatgcagcc 5003927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 5019594 - 5019317
Alignment:
Q  20 gcaggtacacaataacaaacatgcataaattagtcc----ttctacaatacgattctcttttagccaacaacataagccacacacgaacacataaataac 115  Q
    ||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  5019594 gcaggtacacaataacaaacatgcataaattagtccaaccttctgcaatacgattctcttttagccaacaacataagctacgtacgaacacataaataac 5019495  T
Q  116 tcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgagc---nnnnnnnnnnnnnaggtcatctca---- 208  Q
     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||                 ||||||||||        
T  5019494 ccactaacacataaatttcaaacctataattgagtacttcaataactgctccaacattaataattgagcttttttctctttctctcggtcatctcattct 5019395  T
Q  209 --ttccctgttctttcatcatcacttcggctcgcatcagcagccacagccctatcagcctccaactcttccttcttct 284  Q
      |||||| ||||||||||||||||| |||||| |||||||  |||||||||||||||||||| ||||||| ||||||    
T  5019394 ttttccctcttctttcatcatcacttgggctcgtatcagcaagcacagccctatcagcctccacctcttccctcttct 5019317  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 23771160 - 23771082
Alignment:
Q  15 cataggcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 93  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  23771160 cataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 23771082  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 5004245 - 5004165
Alignment:
Q  241 atcagcagccacagccctatcagcctccaactcttccttcttctgtaaagctaaagccttgtttcgacccttttcaatggc 321  Q
    ||||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| | ||||||    
T  5004245 atcagtaggcacagccgtatcagcctccaactcttccttcttctgtaaagctaatgcctcatttcgacccttctgaatggc 5004165  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 5004376 - 5004301
Alignment:
Q  209 ttccctgttctttcatcatcacttcggctcgcatcagcagccacagccctatcagcctccaactcttccttcttct 284  Q
    |||||| ||||||||||||||| | |||||| ||||| ||||||| |||| |||||||||||||||| | ||||||    
T  5004376 ttccctcttctttcatcatcacctgggctcgaatcagtagccacaaccctgtcagcctccaactctttcctcttct 5004301  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 5555680 - 5555626
Alignment:
Q  258 tatcagcctccaactcttccttcttctgtaaagctaaagccttgtttcgaccctt 312  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||||| ||||    
T  5555680 tatcagcctcaaactcttgcttcttctttaaagctaaagccttgtttcgagcctt 5555626  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 5019238 - 5019197
Alignment:
Q  258 tatcagcctccaactcttccttcttctgtaaagctaaagcct 299  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  5019238 tatcagcctccaactcttccttcttctgtaaagctatagcct 5019197  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 5019656 - 5019593
Alignment:
Q  27 cacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 93  Q
    ||||||||||||||||||||||||||||   ||||||||| |||||||| |||| ||||| ||||||    
T  5019656 cacaataacaaacatgcataaattagtc---ctacaatacaattctcttgtagctaacaatataagc 5019593  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 5004927 - 5004865
Alignment:
Q  28 acaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 93  Q
    ||||||| || ||||||||||||||||||||   ||||| |||||||| |||||||||||||||||    
T  5004927 acaataataagcatgcataaattagtccttc---aatacaattctcttctagccaacaacataagc 5004865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 16426661 - 16426624
Alignment:
Q  248 gccacagccctatcagcctccaactcttccttcttctg 285  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  16426661 gccacagccctatcagcctccgactcttccttcttctg 16426624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 5005049 - 5005005
Alignment:
Q  49 ttagtccttctacaatacgattctcttttagccaacaacataagc 93  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||    
T  5005049 ttagtccttctccaatacaattctcttatagccaacaacataagc 5005005  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 5004871 - 5004813
Alignment:
Q  15 cataggcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctc 73  Q
    |||| |||||| ||| |||| ||||||||||| |||||| |||||||||||| ||||||    
T  5004871 cataagcaggtccacgataataaacatgcatacattagttcttctacaatacaattctc 5004813  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 5019828 - 5019799
Alignment:
Q  27 cacaataacaaacatgcataaattagtcct 56  Q
    ||||||||||||||||||||||||||||||    
T  5019828 cacaataacaaacatgcataaattagtcct 5019799  T

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Target: scaffold0275 (Bit Score: 162; Significance: 3e-86; HSPs: 9)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 20950 - 21119
Alignment:
Q  15 cataggcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaacacataaataa 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20950 cataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaacacataaataa 21049  T
Q  115 ctcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgagc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21050 ctcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataactgagc 21119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 247 - 369
Target Start/End: Original strand, 6827 - 6949
Alignment:
Q  247 agccacagccctatcagcctccaactcttccttcttctgtaaagctaaagccttgtttcgacccttttcaatggcggccaaaatagcaacctccatctct 346  Q
    |||| ||||| ||||||| ||||| | |||||||||||||||||||||||||| || |||||| |||| |||||| |||||||||||| |||||| ||||    
T  6827 agcctcagccatatcagcttccaaattttccttcttctgtaaagctaaagcctcgtctcgacctttttgaatggcagccaaaatagcagcctccaactct 6926  T
Q  347 tcaaaagctaaagcctcagccgc 369  Q
    |  |||||||||| |||||||||    
T  6927 tttaaagctaaaggctcagccgc 6949  T

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Target: scaffold0275; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 247 - 369
Target Start/End: Original strand, 12464 - 12586
Alignment:
Q  247 agccacagccctatcagcctccaactcttccttcttctgtaaagctaaagccttgtttcgacccttttcaatggcggccaaaatagcaacctccatctct 346  Q
    |||| ||||| ||||||| ||||| | |||||||||||||||||||||||||| || |||||| |||| |||||| |||||||||||| |||||| ||||    
T  12464 agcctcagccatatcagcttccaaattttccttcttctgtaaagctaaagcctcgtctcgacctttttgaatggcagccaaaatagcagcctccaactct 12563  T
Q  347 tcaaaagctaaagcctcagccgc 369  Q
    |  |||||||||| |||||||||    
T  12564 tttaaagctaaaggctcagccgc 12586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 6758 - 6817
Alignment:
Q  253 agccctatcagcctccaactcttccttcttctgtaaagctaaagccttgtttcgaccctt 312  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||| || |||||||||    
T  6758 agccctatcagcttccgactcttccttcttctgtaaagctaaagcctcgtctcgaccctt 6817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 21153 - 21228
Alignment:
Q  209 ttccctgttctttcatcatcacttcggctcgcatcagcagccacagccctatcagcctccaactcttccttcttct 284  Q
    |||||| |||||||||||||||||  ||  | ||||||||||||||||||||||||||||| ||||||| ||||||    
T  21153 ttccctcttctttcatcatcacttgagccggtatcagcagccacagccctatcagcctccacctcttccctcttct 21228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 11670 - 11715
Alignment:
Q  15 cataggcaggtacacaataacaaacatgcataaattagtccttcta 60  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  11670 cataagcaggtacacaataacaaacatgcataaattagtccttcta 11715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 12395 - 12454
Alignment:
Q  253 agccctatcagcctccaactcttccttcttctgtaaagctaaagccttgtttcgaccctt 312  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| ||  ||||||||    
T  12395 agccgtatcagcctccgactcttccttcttctgtaaagctaaagcctcgtcacgaccctt 12454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 21302 - 21351
Alignment:
Q  253 agccctatcagcctccaactcttccttcttctgtaaagctaaagccttgt 302  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  21302 agccctaacagcctccaactcttccttcttctctgaagctaaagccttgt 21351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 11610 - 11676
Alignment:
Q  27 cacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 93  Q
    |||| |||| |||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  11610 cacagtaacgaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 11676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 46302991 - 46303024
Alignment:
Q  258 tatcagcctccaactcttccttcttctgtaaagc 291  Q
    |||||||||||||||||||||||| |||||||||    
T  46302991 tatcagcctccaactcttccttctcctgtaaagc 46303024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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