View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14130_low_5 (Length: 436)
Name: NF14130_low_5
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14130_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 3843358 - 3843792
Alignment:
| Q |
1 |
ccctccaaagtttctttggccgccgctgctatcgtaagatctaaaaggggggaaaaaggttacacttacacatgatgaatagccacaaaaagaatttatt |
100 |
Q |
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| T |
3843358 |
ccctccaaagtttctttggccgccgctgctatcgtaagatctaaaaggggggaaaaaggttacacttacacatgatgaatagccacaaaaagaatttatt |
3843457 |
T |
|
| Q |
101 |
gttgagcaacggatgcacaactacaatagatggacaaataagaatttcacttgattaatagagtaagttctagagttgcaatcaagagcttcagtcaaat |
200 |
Q |
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| T |
3843458 |
gttgagcaacggatgcacaactacaatagatggacaaataagaatttcgcttgattaatagagtaagttctagagttgcaatcaagagcttcagtcaaat |
3843557 |
T |
|
| Q |
201 |
aggatcaataccagggtattgaatcagtgcatgagtgtgcccatgcttatcaaacatagcaactttctgaacaaagccaaatgcagaaaacacctgtaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3843558 |
aggatcaataccagggtattgaatcagtgcatgagtgtgcccattcttatcaaacatagcaactttctgaacaaagccaaatgcagaaaacacctgtaaa |
3843657 |
T |
|
| Q |
301 |
tgcatgtcagaagtattaaatataaatcaccaataaattacccgtttaatgagaaataaaattctcaccgagagaagaacatctaggggtacagcatact |
400 |
Q |
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| T |
3843658 |
tgcatgtcagaagtattaaatataaatcaccaataaattacccttttaatgagaaataaaattctcaccgagtgaagaacatctaggggtacagcatact |
3843757 |
T |
|
| Q |
401 |
gcatattttcaattgttgccaaaagcgcattactt |
435 |
Q |
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| T |
3843758 |
gcatattttcaattgttgccaaaagcacattactt |
3843792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 300
Target Start/End: Original strand, 2879673 - 2879775
Alignment:
| Q |
198 |
aataggatcaataccagggtattgaatcagtgcatgagtgtgcccatgcttatcaaacatagcaactttctgaacaaagccaaatgcagaaaacacctgt |
297 |
Q |
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|||||||| ||||| ||||| ||||| ||||| ||||| || |||| ||| ||||||||||||| |||||| ||| ||||||||||| ||||||||| |
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| T |
2879673 |
aataggattgatacctgggtactgaattagtgcctgagtttgaccattcttttcaaacatagcaattttctggacagtaccaaatgcagagaacacctgt |
2879772 |
T |
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| Q |
298 |
aaa |
300 |
Q |
| |
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||| |
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| T |
2879773 |
aaa |
2879775 |
T |
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