View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14130_low_7 (Length: 416)
Name: NF14130_low_7
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14130_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 136 - 410
Target Start/End: Original strand, 53869387 - 53869661
Alignment:
| Q |
136 |
tggtttaagtcatcaattcaatttcccacactagtgagttaaatgcctggcagtacaaattgtttacccatcaatatctagcttccataactatgattga |
235 |
Q |
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| T |
53869387 |
tggtttaagtcatcaattcaatttcccacactagtgagttaaatgcctggcagtacaaattgtttacccatcaatatctagcttccatagctatgattga |
53869486 |
T |
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| Q |
236 |
tttgttaagctttataattattcagtttcaactttcaactcttatcacaacattttcactttcaagtgtaataacagattgtcaggaaaataatattgta |
335 |
Q |
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| T |
53869487 |
tttgttaagctttataattattcagtttcaactttcaactcttatcacaacattttcactttcaagtgtaataacagattgtcaggaaaataatattgta |
53869586 |
T |
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| Q |
336 |
ttctgttgtcttcctttgtggcgttgtagcatatataatcatattacatatgtgcttgatccttagaattatcta |
410 |
Q |
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| T |
53869587 |
ttctgttgtcttcctttgtggcgttgtagcatatataatcatattacatatgtgcttgatgcttagaattttcta |
53869661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 53869335 - 53869389
Alignment:
| Q |
17 |
accttttactggatttttattttgtcatctttaattggttctactgagagattgg |
71 |
Q |
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| T |
53869335 |
accttttactggatttttattttgtcatctttaattgtttctactgagagattgg |
53869389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 15443051 - 15443115
Alignment:
| Q |
79 |
gtctctttccctttggaatttttggattttcatctctaattttctttttattaaaaatggtttaag |
144 |
Q |
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| T |
15443051 |
gtctctttccctttgga-tttttggatttccatttctaattttctttttattaaaaatggtttaag |
15443115 |
T |
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