View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14130_low_8 (Length: 360)

Name: NF14130_low_8
Description: NF14130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14130_low_8
NF14130_low_8
[»] chr2 (6 HSPs)
chr2 (117-343)||(17496025-17496251)
chr2 (11-118)||(17496342-17496449)
chr2 (16-74)||(19692848-19692906)
chr2 (11-62)||(9124478-9124529)
chr2 (11-74)||(25563810-25563873)
chr2 (11-64)||(24227584-24227637)
[»] chr8 (4 HSPs)
chr8 (11-143)||(13644377-13644509)
chr8 (11-143)||(13744802-13744934)
chr8 (30-92)||(27138390-27138452)
chr8 (11-90)||(5345937-5346016)
[»] chr1 (1 HSPs)
chr1 (11-216)||(25517476-25517684)
[»] chr6 (1 HSPs)
chr6 (53-134)||(35036526-35036607)
[»] chr3 (2 HSPs)
chr3 (33-129)||(47597647-47597743)
chr3 (11-59)||(27686028-27686076)
[»] scaffold0194 (2 HSPs)
scaffold0194 (33-118)||(6536-6621)
scaffold0194 (152-234)||(6657-6739)
[»] chr4 (1 HSPs)
chr4 (246-343)||(25367654-25367750)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 117 - 343
Target Start/End: Complemental strand, 17496251 - 17496025
Alignment:
Q  117 gattgtagactctaaagaacggagcctatgaggtgacgtcagaagttgaaaactatgaacagttttgtcgtcttctgaaagattgtcactatcagactca 216  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  17496251 gattgtagactctaaagaatggagcctctgaggtgacgtcagaagttgaagactatgaacaattttgtcgtcttctgaaggattgtcactatcaaactca 17496152  T
Q  217 aagtagtacagtttgtctaagtttcactaccataaactcttttaattgcttttataaacaaaataaattccgtcaatttctaagttgaacaacgatccat 316  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||    
T  17496151 aagtagtacaatttgtctaagtttcactaccataaactcttttaattgcttttataaacaaaataaatttcgtcaatttctaagttgaacagcgatctat 17496052  T
Q  317 atggagattataactaactactatatt 343  Q
     || ||| ||||||| |||||||||||    
T  17496051 gtgaagactataacttactactatatt 17496025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 17496449 - 17496342
Alignment:
Q  11 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcat 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||    
T  17496449 gaagcaaaggataagcttatatgactttgaacaagatctgaataaaggtcaactagaaaggcaaaattctgatcataagaggaatttcgtttagaagcat 17496350  T
Q  111 ctgaagga 118  Q
    ||||||||    
T  17496349 ctgaagga 17496342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 19692848 - 19692906
Alignment:
Q  16 aaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaa 74  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||||||  |||||||    
T  19692848 aaaggagaagcttatatgacttggaacaagatctaaagaaaggtcaaccataaagtcaa 19692906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 9124529 - 9124478
Alignment:
Q  11 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaa 62  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||||||||||||    
T  9124529 gaagcaaaagagaaacttatatgactttgatcaaaatctgaataaaggtcaa 9124478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 25563810 - 25563873
Alignment:
Q  11 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaa 74  Q
    ||||||||||||||||||||||||||||| | ||||| || |  |||||||||||| |||||||    
T  25563810 gaagcaaaggagaagcttatatgactttgcaaaagatttggaggaaggtcaaccagaaagtcaa 25563873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 24227584 - 24227637
Alignment:
Q  11 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaacc 64  Q
    |||||||| |||||||||||| ||||| || ||||||||||| |||||||||||    
T  24227584 gaagcaaaagagaagcttataagacttggaccaagatctgaagaaaggtcaacc 24227637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 13644377 - 13644509
Alignment:
Q  11 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcat 110  Q
    |||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||| |||||||  ||||||||| || | |||||||||||||||||||    
T  13644377 gaagcaaaggagtagcttatatgactatgaacaagatatgaagaaaggtcaaccagaaagtcaatattctgatcagaataagaatttcgtttagaagcat 13644476  T
Q  111 ctgaaggattgtagactctaaagaacggagcct 143  Q
     ||||| | || ||||||| ||| | |||||||    
T  13644477 atgaagaaatgaagactctgaaggatggagcct 13644509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 13744802 - 13744934
Alignment:
Q  11 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcat 110  Q
    |||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||| |||||||  ||||||||| || | |||||||||||||||||||    
T  13744802 gaagcaaaggagtagcttatatgactatgaacaagatatgaagaaaggtcaaccagaaagtcaatattctgatcagaataagaatttcgtttagaagcat 13744901  T
Q  111 ctgaaggattgtagactctaaagaacggagcct 143  Q
     ||||| | || ||||||| ||| | |||||||    
T  13744902 atgaagaaatgaagactctgaaggatggagcct 13744934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 27138452 - 27138390
Alignment:
Q  30 tatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagagg 92  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||| | |||||| | ||||||    
T  27138452 tatgacttggaacaagatctgaagaaaggtcaaccagaaagtcaatgctctgataagaagagg 27138390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 5346016 - 5345937
Alignment:
Q  11 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataaga 90  Q
    |||||||| ||||||||||||  |||| ||||||||| |||| |||| ||||| || ||||||| ||| |||||| ||||    
T  5346016 gaagcaaaagagaagcttataaaacttggaacaagatttgaagaaagatcaactagaaagtcaacgttatgatcagaaga 5345937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 25517684 - 25517476
Alignment:
Q  11 gaagcaaaggagaagcttatatgactttgaacaagatct--gaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagc 108  Q
    |||||||| |||||||||||| |||||  |||||||| |  ||| |||||| |||||| |||||||  ||||||||| ||||| | ||| ||| |||||     
T  25517684 gaagcaaaagagaagcttatacgacttgaaacaagatttttgaagaaaggtaaaccagaaagtcaacattctgatcaaaagagaatttttgttcagaagt 25517585  T
Q  109 atctgaaggattgtagactctaaagaacggagcctatg-aggtgacgtcagaagttgaaaactatgaacagttttgtcgtcttctgaaagattgtcacta 207  Q
    |||||||||| || ||||||||||| | | ||| |||| ||||||| |||||  ||||| ||| |||||   ||||||||||| |||| || | || | |    
T  25517584 atctgaaggaatgaagactctaaaggatgaagcatatgaaggtgacatcagacattgaagactctgaaccaatttgtcgtcttttgaaggaatatcgcga 25517485  T
Q  208 tcagactca 216  Q
    |||||||||    
T  25517484 tcagactca 25517476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 35036607 - 35036526
Alignment:
Q  53 taaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcatctgaaggattgtagactctaaaga 134  Q
    ||||||||||||||  ||||||  |  |||||| ||||| | |||||||||||||||||||||||| || ||||||||||||    
T  35036607 taaaggtcaaccagatagtcaacatcttgatcagaagagaattttcgtttagaagcatctgaaggaatgaagactctaaaga 35036526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 47597743 - 47597647
Alignment:
Q  33 gactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcatctgaaggattgtagactct 129  Q
    |||||||||||| ||||||| |||| ||||| || |||||||   |||||||| ||||||||||||||| | || ||| ||||| |||| |||||||    
T  47597743 gactttgaacaaaatctgaagaaagatcaactagaaagtcaacactctgatcagaagaggaatttcgttcaaaaacatatgaagaattgaagactct 47597647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 27686076 - 27686028
Alignment:
Q  11 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggt 59  Q
    |||||||| ||||| |||||| ||||| |||||||||||||| ||||||    
T  27686076 gaagcaaaagagaatcttataagacttggaacaagatctgaagaaaggt 27686028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 6536 - 6621
Alignment:
Q  33 gactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcatctgaagga 118  Q
    ||||| ||||||||| |||| ||||||||||||  ||||||| ||||| |||| ||||||| |||   | ||||||||||||||||    
T  6536 gacttggaacaagatatgaagaaaggtcaaccaaaaagtcaacgttctaatcagaagaggattttatctcagaagcatctgaagga 6621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 6657 - 6739
Alignment:
Q  152 acgtcagaagttgaaaactatgaacagttttgtcgtcttctgaaagattgtcactatcagactcaaagtagtacagtttgtct 234  Q
    ||||||| || |||| ||| ||| ||| ||||||||||| |||| || |||||||||||||||||  ||||||  ||||||||    
T  6657 acgtcagcagctgaagactctgaccagctttgtcgtcttttgaaggaatgtcactatcagactcagggtagtagtgtttgtct 6739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 343
Target Start/End: Original strand, 25367654 - 25367750
Alignment:
Q  246 ccataaactcttttaattgcttttataaacaaaataaattccgtcaatttctaagttgaacaacgatccatatggagattataactaactactatatt 343  Q
    ||||| |||||||||||||  |||||||||||| ||||||  || |||||||||||||||| || || ||| |||||| | ||||| |||||| ||||    
T  25367654 ccatatactcttttaattgtgtttataaacaaa-taaattttgttaatttctaagttgaacgacaattcatgtggagactgtaacttactactttatt 25367750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University