View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14131_high_1 (Length: 796)
Name: NF14131_high_1
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14131_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 14 - 722
Target Start/End: Complemental strand, 52720603 - 52719895
Alignment:
| Q |
14 |
atcacctcgttcactgaaagatcatcaaaaagtgccaagttaatacctatcatatattaaaattatgtgtacataatacattgtgatgattctgtataat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52720603 |
atcacctcgttcactgaaagatcatcaaaaagtgccaagttaatacctatcatatattaaaattatgtgtacataatacattgtgatgattctgtataat |
52720504 |
T |
|
| Q |
114 |
ttcataatgtagtgtttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatccacgcgg |
213 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52720503 |
gtaataatgtagtatttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatccacgcgg |
52720404 |
T |
|
| Q |
214 |
ccattgcttaccaagctactcgattccatttcctcctgnnnnnnnnn-aaatttaaaacaatatgacataacatgaaaaatgtgtaattatttatataat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52720403 |
ccattgcttaccaagctactcgattccatttcctcctgttttttttttaaatttaaaacaatatgacataacatgaaaaatgtgtaattatttatataat |
52720304 |
T |
|
| Q |
313 |
acattcaaataaagtaaagaaatattgccttgtaatatattttgctatgaggagtaaccatggattgaattgctaaagtttaattgaaggtgtaattgtt |
412 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52720303 |
acattcaaataaagtatacaaatattgccttgtaatatatattgctatgaggagtaaccatggattgaattgctaaagtttaattgaaggtgtaattgtt |
52720204 |
T |
|
| Q |
413 |
agtgagatgaaatgaaaagtaacactaattttacattttatatatgttagcagagtggaagaaagcgtctcaatcaggcagggtcatttttatttgggtt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52720203 |
agtgagatgaaatgaaaagtaacactaattttacattttatatatgttagcagagtggaagaaagcgtctcgatcaggcagggtcatttttatttgggtt |
52720104 |
T |
|
| Q |
513 |
acagttgatttatggctgtaacaaataatgtaggctggctggcacaaacttggttaacaaatggaggtttcacaagcattaagggtattaattataggct |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
52720103 |
acagttgatttatggctgtaacaaataatgtaggctggctggcacaaacttggttaacaaatggaggcttcacaggcatttagggtattaattataggct |
52720004 |
T |
|
| Q |
613 |
aaaatgttgttttggtcccttaacgnnnnnnnnnnnagtatcgctttagtcaagtaataaaaaattcgtttagatctcttaagtccttctccgttatatg |
712 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
52720003 |
aaaatgttgttttggtcccttaac-cttttttttttagtattgctttagtcaagtaataaaaagtccgtttagatctcttaagtccttctccgttatatg |
52719905 |
T |
|
| Q |
713 |
ttttggtctc |
722 |
Q |
| |
|
|||||||||| |
|
|
| T |
52719904 |
ttttggtctc |
52719895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 52711724 - 52711342
Alignment:
| Q |
14 |
atcacctcgttcactgaaagatcatcaaaaagtgccaagtta------atacctatcatatattaaaattat-----gtgtacataatacattgtgatga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||| || | |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
52711724 |
atcacctcgttcactgaaagatcatcaaaaagggccaagttattgctaatacataccgtatattaaaactatactatgtgtacataatacattgtgatga |
52711625 |
T |
|
| Q |
103 |
ttctgtataatttcataatgtagtgtttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgcc |
202 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
52711624 |
ttctgtataatttaataatgtagtatttagttcatacttatgatgaagggagctgccttccatcctccggttgttcttttattagcaatcctaccttgcc |
52711525 |
T |
|
| Q |
203 |
gatccacgcggccattgcttaccaagctactcgattccatttcctcctgnnnnnnnnnaaatttaaaacaatatgacataacatgaaaaatgtgtaatta |
302 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52711524 |
gatccacacggccattgcttaccaagctactcgattccatttcctcctg--ttttataaaattcaaaacaatatgacataacatgaaaaatacgtaatta |
52711427 |
T |
|
| Q |
303 |
tttatataatacattcaaataaagtaaagaaatattgccttgtaatatattttgctatgaggagtaaccatggattgaattgcta |
387 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
52711426 |
tttatataatacattcaaataaagtaaacaaatattgccttgtgatatatgttgctatgaggagtatccatggattgaattgcta |
52711342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 406 - 604
Target Start/End: Complemental strand, 52711349 - 52711144
Alignment:
| Q |
406 |
aattgttagtgagatgaaatgaaaagtaacactaattttacattttatatatgttagcagagtggaagaaagcgtctcaatcaggcagggtcat------ |
499 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
52711349 |
aattgctagtgagatgaaatgaaaagtaacactaattttgcattttatataggttagcagagtgtaagaaagcgtctcaatcaggcaaggtcatccatca |
52711250 |
T |
|
| Q |
500 |
-ttttatttgggttacagttgatttatggctgtaacaaataatgtaggctggctggcacaaacttggttaacaaatggaggtttcacaagcattaagggt |
598 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||||| ||||| |
|
|
| T |
52711249 |
tttttatttgggttacaattgatttatggctgtaacaaataatgtaggctggccggcacaaacttggttaacaaatggaagctccacaagcatttagggt |
52711150 |
T |
|
| Q |
599 |
attaat |
604 |
Q |
| |
|
|||||| |
|
|
| T |
52711149 |
attaat |
52711144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 52697945 - 52697816
Alignment:
| Q |
122 |
gtagtgtttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatccacgcggccattgct |
221 |
Q |
| |
|
||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||| || |
|
|
| T |
52697945 |
gtagtatttatttcatacatatgatatagggagctgccttccatcctccagttgttcgtttatcagcaatcctaccatgcctatccacacgatcattact |
52697846 |
T |
|
| Q |
222 |
taccaagctactcgattccatttcctcctg |
251 |
Q |
| |
|
||||||||| || | |||||||||||||| |
|
|
| T |
52697845 |
caccaagctattcaaatccatttcctcctg |
52697816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 723 - 789
Target Start/End: Complemental strand, 52719763 - 52719697
Alignment:
| Q |
723 |
atctattgtaagtaatagtacaccatcaccatctcatattgtttttccctttcttccttttcttctc |
789 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52719763 |
atctattgtaagtaatagtacaccatcaccatctcatattgtttttccctttcttccttttcttctc |
52719697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University