View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14131_high_10 (Length: 250)

Name: NF14131_high_10
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14131_high_10
NF14131_high_10
[»] chr4 (8 HSPs)
chr4 (24-242)||(10395817-10396034)
chr4 (23-86)||(27272580-27272643)
chr4 (26-86)||(53469713-53469773)
chr4 (23-86)||(29235178-29235242)
chr4 (26-91)||(13816947-13817012)
chr4 (30-84)||(21206361-21206415)
chr4 (23-105)||(53472599-53472679)
chr4 (23-84)||(32015174-32015235)
[»] chr7 (4 HSPs)
chr7 (23-110)||(7961762-7961849)
chr7 (31-105)||(11269947-11270021)
chr7 (36-103)||(1103150-1103217)
chr7 (24-91)||(1716687-1716754)
[»] chr1 (5 HSPs)
chr1 (23-110)||(22827084-22827171)
chr1 (23-110)||(22840954-22841041)
chr1 (23-80)||(22826689-22826746)
chr1 (23-103)||(24284815-24284895)
chr1 (23-86)||(24272756-24272819)
[»] chr6 (12 HSPs)
chr6 (23-110)||(13558032-13558119)
chr6 (23-81)||(13556061-13556119)
chr6 (23-107)||(2921899-2921983)
chr6 (23-110)||(2923215-2923303)
chr6 (28-105)||(11678830-11678907)
chr6 (24-105)||(14721699-14721779)
chr6 (26-110)||(27340665-27340747)
chr6 (26-110)||(27401405-27401487)
chr6 (28-86)||(11677131-11677189)
chr6 (37-86)||(16403533-16403581)
chr6 (25-86)||(16910155-16910216)
chr6 (23-83)||(22880026-22880086)
[»] chr2 (5 HSPs)
chr2 (23-100)||(10128496-10128573)
chr2 (23-105)||(8761229-8761312)
chr2 (23-105)||(37965537-37965620)
chr2 (48-108)||(15140795-15140855)
chr2 (26-83)||(25550091-25550147)
[»] chr5 (4 HSPs)
chr5 (22-105)||(32796350-32796433)
chr5 (24-97)||(26896578-26896651)
chr5 (26-86)||(19670679-19670739)
chr5 (26-105)||(32795590-32795669)
[»] chr3 (3 HSPs)
chr3 (23-105)||(25889614-25889696)
chr3 (27-84)||(31141415-31141472)
chr3 (26-80)||(30046435-30046489)
[»] scaffold0007 (1 HSPs)
scaffold0007 (23-86)||(260222-260285)
[»] chr8 (1 HSPs)
chr8 (30-84)||(33897221-33897275)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 10396034 - 10395817
Alignment:
Q  24 tgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacataattcaagacatatttca 123  Q
    |||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |    
T  10396034 tgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcatcttctctgatgtgagacataattcaagacatattt-a 10395936  T
Q  124 acagtttcaaacaagcttaggaaactatnnnnnnntgtatgcaagcaaaacaagggctcacatcatgaatctcaaggaatgtatgacacatttcaccaag 223  Q
    ||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10395935 acagtttcaaacaagcttaggaaactatcaaaaaatgtatgcaagtaaaacaagggctcacatcatgaatctcaaggaatgtatgacacatttcaccaag 10395836  T
Q  224 agaaatggcaccatctctg 242  Q
    |||||||||||||||||||    
T  10395835 agaaatggcaccatctctg 10395817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 27272643 - 27272580
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcat 86  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  27272643 gtgcaagaaatactaacacacaagacttttatttatatgaccaaacctttgcatatttcttcat 27272580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 53469713 - 53469773
Alignment:
Q  26 caagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcat 86  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  53469713 caagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttcat 53469773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 29235178 - 29235242
Alignment:
Q  23 gtgcaagaaat-actaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcat 86  Q
    ||||||||||| ||||||||||||||| |||||||||||| |||| ||||||||||||| |||||    
T  29235178 gtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcat 29235242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 13817012 - 13816947
Alignment:
Q  26 caagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttct 91  Q
    ||||||||| ||||||| ||||  ||||||||||||||||| |||| |||||||||||||| ||||    
T  13817012 caagaaataataacacataaggtctttatttatatgaccaagtcttcgcatatttcttcatattct 13816947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 21206415 - 21206361
Alignment:
Q  30 aaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttc 84  Q
    ||||||||| ||||| |||||||||||||||||||||  ||||| ||||||||||    
T  21206415 aaatactaatacacatggcttttatttatatgaccaagcctttgtatatttcttc 21206361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 53472599 - 53472679
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacat 105  Q
    ||||| |||||||||||||||||  ||||||||||||||  ||| ||||||||||||||||| | || ||| |||||| ||||    
T  53472599 gtgcatgaaatactaacacacaa-acttttatttatatg-gcaagtctttgcatatttcttcgtattatccgatgtggaacat 53472679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 32015235 - 32015174
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttc 84  Q
    |||||||||||||||||||||||  | ||||||||| |  |||| ||||||||||| |||||    
T  32015235 gtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttc 32015174  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 7961849 - 7961762
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacataattc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | | ||||||||||||||||    
T  7961849 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttgcatatttcttcatattatgcgatgtgggacataattc 7961762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 11270021 - 11269947
Alignment:
Q  31 aatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacat 105  Q
    |||||||||||||||||||||||||||||||||||||  |||  |||||||||||| || ||| |||||||||||    
T  11270021 aatactaacacacaaggcttttatttatatgaccaaacttttttatatttcttcatattatccgatgtgggacat 11269947  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 1103217 - 1103150
Alignment:
Q  36 taacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggac 103  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||||||||| || ||| |||||||||    
T  1103217 taacacacaaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggac 1103150  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 1716687 - 1716754
Alignment:
Q  24 tgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttct 91  Q
    ||||||||||| ||||||||||| | ||||||||||||  ||| ||||| ||||||| ||||| ||||    
T  1716687 tgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatattct 1716754  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 22827084 - 22827171
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacataattc 110  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||    
T  22827084 gtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatttcttcatattatccgatgtgggacataattc 22827171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 22841041 - 22840954
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacataattc 110  Q
    |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||| || ||| ||||||||||||||||    
T  22841041 gtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatttcttcatattatccgatgtgggacataattc 22840954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 22826689 - 22826746
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatattt 80  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||| ||||    
T  22826689 gtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagattt 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 24284895 - 24284815
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggac 103  Q
    |||||||||||| |||||||||| || |||||||||||  |||||| ||||||||||| ||||| |||||  |||||||||    
T  24284895 gtgcaagaaatattaacacacaatgcctttatttatatagccaaatatttgcatatttgttcatattctctgatgtgggac 24284815  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 24272819 - 24272756
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcat 86  Q
    |||||||||||||||||||||||||| ||||| |||||   ||| |||||||||||||||||||    
T  24272819 gtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcat 24272756  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 13558032 - 13558119
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacataattc 110  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||    
T  13558032 gtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtgggacataattc 13558119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 13556061 - 13556119
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  13556061 gtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttgcatatttc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 2921899 - 2921983
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacataa 107  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||| || |||||||||||||||| || ||| ||||| |||||||    
T  2921899 gtgcaagaaatactaacacataagacttttatttatattaccaagtcattgcatatttcttcatattatccgatgtgagacataa 2921983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 2923215 - 2923303
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatc-tttgcatatttcttcatcttctccaatgtgggacataattc 110  Q
    ||||||||| |||||||||||||| |||||||||||||||||||  | ||||||||||||||||| || ||| |||||||| |||||||    
T  2923215 gtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatatttcttcatattatccgatgtgggaaataattc 2923303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 11678907 - 11678830
Alignment:
Q  28 agaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacat 105  Q
    |||||||||||||||||||  ||||||||| ||||||||  |||||||||||||||||| || ||| |||||||||||    
T  11678907 agaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatattatccgatgtgggacat 11678830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 14721779 - 14721699
Alignment:
Q  24 tgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacat 105  Q
    ||||||||||||| | | |||||||||||||||||| | |||||||||||||||||||||  | |||||| |||||||||||    
T  14721779 tgcaagaaatacttataaacaaggcttttatttatagg-ccaaatctttgcatatttctttctattctccgatgtgggacat 14721699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 27340665 - 27340747
Alignment:
Q  26 caagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacataattc 110  Q
    ||||| |||||||||||||  | ||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||| ||||    
T  27340665 caagatatactaacacaca--gtttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtgggacattattc 27340747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 27401405 - 27401487
Alignment:
Q  26 caagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacataattc 110  Q
    ||||| |||||||||||||  | ||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||| ||||    
T  27401405 caagatatactaacacaca--gtttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtgggacattattc 27401487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 11677189 - 11677131
Alignment:
Q  28 agaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcat 86  Q
    |||||||||||||||||||  |||||||||||||| |||  ||||||||||||||||||    
T  11677189 agaaatactaacacacaagagttttatttatatgatcaatcctttgcatatttcttcat 11677131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 16403581 - 16403533
Alignment:
Q  37 aacacacaaggcttttatttatatgaccaaatctttgcatatttcttcat 86  Q
    |||||||||| |||||||||||||||| || || ||||||||||||||||    
T  16403581 aacacacaagacttttatttatatgactaagtc-ttgcatatttcttcat 16403533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 16910155 - 16910216
Alignment:
Q  25 gcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcat 86  Q
    |||| ||||||||||||||||  ||||||||||||   |||| |||||||||||| ||||||    
T  16910155 gcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcat 16910216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 22880026 - 22880086
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttctt 83  Q
    |||||||||||| ||||||||||  | ||||||||||||||||| | |||  |||||||||    
T  22880026 gtgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 22880086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 10128573 - 10128496
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgg 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||    
T  10128573 gtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtgg 10128496  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 8761229 - 8761312
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaa-tctttgcatatttcttcatcttctccaatgtgggacat 105  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| || ||  |||||||||||    
T  8761229 gtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatatttcttcatattatctgatgtgggacat 8761312  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 37965537 - 37965620
Alignment:
Q  23 gtgcaagaaatactaacacacaagg-cttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacat 105  Q
    ||||||||||||||||||||||| | |||||||||||||  |||| ||||||||||||||||||| || ||| ||||| |||||    
T  37965537 gtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtgagacat 37965620  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 15140855 - 15140795
Alignment:
Q  48 cttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacataat 108  Q
    ||||||||||||||||||||||||| ||||||||||||| ||  || ||||||||||||||    
T  15140855 cttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacataat 15140795  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 25550147 - 25550091
Alignment:
Q  26 caagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttctt 83  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||    
T  25550147 caagaaatacta-cacacaagacttttatttatatggccaaatctttacatatttctt 25550091  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 32796350 - 32796433
Alignment:
Q  22 tgtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacat 105  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||| || ||| || ||||||||    
T  32796350 tgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacat 32796433  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 26896651 - 26896578
Alignment:
Q  24 tgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatg 97  Q
    |||||||||||||||||||||| |  |||||||||||| |||| ||||||||||||||||| | ||||||||||    
T  26896651 tgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattctccaatg 26896578  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 19670739 - 19670679
Alignment:
Q  26 caagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcat 86  Q
    |||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  19670739 caagtaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcat 19670679  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 32795590 - 32795669
Alignment:
Q  26 caagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacat 105  Q
    |||| |||||| |||| |||| |||||||| ||||||| || ||||||||||||||||||| || ||| |||||||||||    
T  32795590 caagtaatactgacacgcaagacttttattaatatgactaagtctttgcatatttcttcatattatccgatgtgggacat 32795669  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 25889696 - 25889614
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcatcttctccaatgtgggacat 105  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||  ||||||| || ||| |||||||||||    
T  25889696 gtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcatgttatccgatgtgggacat 25889614  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 31141472 - 31141415
Alignment:
Q  27 aagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttc 84  Q
    ||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||    
T  31141472 aagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttc 31141415  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 30046489 - 30046435
Alignment:
Q  26 caagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatattt 80  Q
    |||||||||||||||||||| |||||||||||||||  ||| |||||||||||||    
T  30046489 caagaaatactaacacacaaagcttttatttatatggtcaagtctttgcatattt 30046435  T

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Target: scaffold0007 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 260222 - 260285
Alignment:
Q  23 gtgcaagaaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttcat 86  Q
    ||||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||||||    
T  260222 gtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcat 260285  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 33897275 - 33897221
Alignment:
Q  30 aaatactaacacacaaggcttttatttatatgaccaaatctttgcatatttcttc 84  Q
    ||||||||||||||||| |||||||||||||   ||||||||| |||||||||||    
T  33897275 aaatactaacacacaagacttttatttatattgtcaaatctttacatatttcttc 33897221  T

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