View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14131_high_3 (Length: 400)
Name: NF14131_high_3
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14131_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 35341162 - 35340790
Alignment:
| Q |
18 |
cttatgtccataaaagtgacactgattgacaaatacaaacatcttgagaattggaattcaagtgattccacaccatgtggttggaaaggtgtcatctgca |
117 |
Q |
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| T |
35341162 |
cttatgtccataaaagtgacactggttgacaaatacaatcatcttgtgaattggaattcaattgattccacaccatgtggttggaaaggtgtcatctgca |
35341063 |
T |
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| Q |
118 |
acagtgacatcaatccaatggtggagtctcttgacttgcatgcaatgaatctctcaggctcattgtcttccagcattggtggtttggttcacttgcttca |
217 |
Q |
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| T |
35341062 |
acagtgacatcaatccaatggtggagtctcttgacttgcatgcaatgaatctctcaggctcattgtcttccagcattggtggtttggttcacttgcttca |
35340963 |
T |
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| Q |
218 |
ccttaatctgtctcaaaacactttctctggttttataccaaaggaaattggaaactgttcaagtttgcaagttcttggcctcaacatcaatgaatttgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35340962 |
ccttaatctgtctcaaaacactttctctggttctataccaaaggaaattggaaactgttcaagtttgcaagttcttggcctcaacatcaatgaatttgaa |
35340863 |
T |
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| Q |
318 |
ggtcaaattcctgtagaaataggccggctttcgaatttaaccgagttgcatctttcaaacaaccagctctctg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35340862 |
ggtcaaattcctgtagaaataggccggctttcgaatttaaccgagttgcatctttcaaacaaccagctctctg |
35340790 |
T |
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