View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14131_low_10 (Length: 393)
Name: NF14131_low_10
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14131_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 16690503 - 16690144
Alignment:
| Q |
15 |
aactaagatttagcattaaaaaatgtggtcactagtcactacatattgattttttgaggtaagtgtactcagactctt--aagtacaaaagtgctggcag |
112 |
Q |
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| T |
16690503 |
aactaagatttagcattaaaaaatgtgttaactagtcactacatattgattctgtgaggcaagtat--tcagactcctctaactgcaaaactgctggcaa |
16690406 |
T |
|
| Q |
113 |
cttgtctctgccatttg---------acctgcaaagcagtaaggaagccaatttatgaattcacccaacg-aataatgtatatgcatgtcaatgtcaagc |
202 |
Q |
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| T |
16690405 |
cttgtctccgccatttgtgaatagaaacctacaaagcaacaaggaagctagtttatgaatggacccaacccaagaacatatatgcatatcaatgtcaaac |
16690306 |
T |
|
| Q |
203 |
tatatgaactttgatgctaatgcattatgttgaataaatatcaagactagtatatcatttcagcaggaaagccaccgtaatctcctggttctgtgatatc |
302 |
Q |
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| T |
16690305 |
tat--gaactttgatgctaatgcattagattgaataaataacaagagtagtagatcattacagcaggaaagccaccgtagtctccaggttctgtgatgtc |
16690208 |
T |
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| Q |
303 |
cttggttacacaacttaacgcagtgggtcgaacctgcaagcacgttgcaatcagacgtcttctc |
366 |
Q |
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| T |
16690207 |
cttggttacacaacttaacgcagcaagtcgaacctgcaagaacttagcaatcagatgtcttctc |
16690144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 17664739 - 17664380
Alignment:
| Q |
15 |
aactaagatttagcattaaaaaatgtggtcactagtcactacatattgattttttgaggtaagtgtactcagactctt--aagtacaaaagtgctggcag |
112 |
Q |
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| T |
17664739 |
aactaagatttagcattaaaaaatgtgttaactagtcactacatattgattctgtgaggcaagtat--tcagactcctctaactgcaaaactgctggcaa |
17664642 |
T |
|
| Q |
113 |
cttgtctctgccatttg---------acctgcaaagcagtaaggaagccaatttatgaattcacccaacg-aataatgtatatgcatgtcaatgtcaagc |
202 |
Q |
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| T |
17664641 |
cttgtctccgccatttgtgaatagaaacctacaaagcaacaaggaagctagtttatgaatggacccaacccaagaacatatatgcatatcaatgtcaaac |
17664542 |
T |
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| Q |
203 |
tatatgaactttgatgctaatgcattatgttgaataaatatcaagactagtatatcatttcagcaggaaagccaccgtaatctcctggttctgtgatatc |
302 |
Q |
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| T |
17664541 |
tat--gaactttgatgctaatgcattagattgaataaataacaagagtagtagatcattacagcaggaaagccaccgtagtctccaggttctgtgatgtc |
17664444 |
T |
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| Q |
303 |
cttggttacacaacttaacgcagtgggtcgaacctgcaagcacgttgcaatcagacgtcttctc |
366 |
Q |
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| T |
17664443 |
cttggttacacaacttaacgcagcaagtcgaacctgcaagaacttagcaatcagatgtcttctc |
17664380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 16700873 - 16700758
Alignment:
| Q |
263 |
cagcaggaaagccaccgtaatctcctggttctgtgatatccttggttacacaacttaacgcagtgggtcgaacctgcaagcacgttgcaatcagacgtct |
362 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16700873 |
cagcaggaaagccaccgtagtctcctggttctgtgatatccttggttacacaacttaacgcagtgggtcgaacctgcaagcacgttgcaatcagatgtct |
16700774 |
T |
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| Q |
363 |
tctcctcattcccaat |
378 |
Q |
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|||||||||||||||| |
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| T |
16700773 |
tctcctcattcccaat |
16700758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 17675109 - 17674994
Alignment:
| Q |
263 |
cagcaggaaagccaccgtaatctcctggttctgtgatatccttggttacacaacttaacgcagtgggtcgaacctgcaagcacgttgcaatcagacgtct |
362 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17675109 |
cagcaggaaagccaccgtagtctcctggttctgtgatatccttggttacacaacttaacgcagtgggtcgaacctgcaagcacgttgcaatcagatgtct |
17675010 |
T |
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| Q |
363 |
tctcctcattcccaat |
378 |
Q |
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|||||||||||||||| |
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| T |
17675009 |
tctcctcattcccaat |
17674994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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