View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14131_low_12 (Length: 338)

Name: NF14131_low_12
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14131_low_12
NF14131_low_12
[»] chr7 (2 HSPs)
chr7 (18-328)||(36912687-36912997)
chr7 (43-117)||(36912589-36912663)
[»] chr8 (1 HSPs)
chr8 (43-328)||(11166009-11166294)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 36912687 - 36912997
Alignment:
Q  18 tgattgaggaagaagatgaagatggagacaatgaacgtgaaatagtagaagattctatggattttgaaagagttgttgaggaagaagatgaagactatga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36912687 tgattgaggaagaagatgaagatggagacaatgaacgtgaaatagtagaagattctatggattttgaaagagttgttgaggaagaagatgaagactatga 36912786  T
Q  118 agattctcttgcagaggaagaagatgaaaatgattttggactggattttgagctagttgcggtggaagaatatgaaggtttacaagaagaagaaaaaaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36912787 agattctcttgcagaggaagaagatgaaaatgattttggactggattttgagctagttgtggtggaagaatatgaaggtttacaagaagaagaaaaaaga 36912886  T
Q  218 gaagttgtggaggccatgctaaaaatttaccttcgaatactttattaaaacatgatataaatggtgttgtgtttttgtttatcgtgaactttaattttat 317  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36912887 gaagttgtggaggccatgctaaaaaattacattccaatactttattaaaacatgatataaatggtgttgtgtttttgtttatcgtgaactttaattttat 36912986  T
Q  318 gttggtctctg 328  Q
    |||||| ||||    
T  36912987 gttggtttctg 36912997  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 36912589 - 36912663
Alignment:
Q  43 agacaatgaacgtgaaatagtagaagattctatggattttgaaagagttgttgaggaagaagatgaagactatga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  36912589 agacaatgaacgtgaaatagtagaagattctatggattttgaaagagttgcagtggaagaagatgaagactatga 36912663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 43 - 328
Target Start/End: Original strand, 11166009 - 11166294
Alignment:
Q  43 agacaatgaacgtgaaatagtagaagattctatggattttgaaagagttgttgaggaagaagatgaagactatgaagattctcttgcagaggaagaagat 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11166009 agacaatgaacgtgaaatagtagaagattctatggattttgaaagagttgtagtggaagaagatgaagactatgaagattctcttacagaggaagaagat 11166108  T
Q  143 gaaaatgattttggactggattttgagctagttgcggtggaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaa 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11166109 gaaaatgattttggactggattttgagctagttgtggtggaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaa 11166208  T
Q  243 tttaccttcgaatactttattaaaacatgatataaatggtgttgtgtttttgtttatcgtgaactttaattttatgttggtctctg 328  Q
     |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  11166209 attacattccaatactttattaaaacatgatataaatggtgttgtgtttttgtttatcgagaactttaattttatgttggtttctg 11166294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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