View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14131_low_14 (Length: 305)
Name: NF14131_low_14
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14131_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 120 - 289
Target Start/End: Complemental strand, 10343341 - 10343172
Alignment:
| Q |
120 |
tagtactattcatttgagactaagttgcagtattatttggtcctgcatttgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgac |
219 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10343341 |
tagtactattcatttgagactgagtcgcagtgctacttggtcttgcacatgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgac |
10343242 |
T |
|
| Q |
220 |
actgttacgactattgttccgccattatgttgatgaaattgaagacatgttgttgacatcgtcttgatga |
289 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10343241 |
actgttaccactattgttccatcattatgttaatgaaattgaagacatgttgttgacatcgtcttgatga |
10343172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 10343497 - 10343388
Alignment:
| Q |
18 |
ttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaaccaacccataataaatgaagttgttgatgtaggcgcaggacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10343497 |
ttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaaccaacgcataataaatgaagttgttgatgtaggcgcaggacca |
10343398 |
T |
|
| Q |
118 |
agtagtacta |
127 |
Q |
| |
|
| |||||||| |
|
|
| T |
10343397 |
aatagtacta |
10343388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 10181578 - 10181507
Alignment:
| Q |
58 |
atttcaactatgttgaaccaacccataataaatgaagttgttgatgtaggcgcaggaccaagtagtactatt |
129 |
Q |
| |
|
|||||||||||||| ||||||| ||| || ||||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
10181578 |
atttcaactatgttaaaccaacacatgatgaatgaagttgttgctgtaggtgcaggtccaagtagtactatt |
10181507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 10343372 - 10343523
Alignment:
| Q |
131 |
atttgagactaagttgcagtattatttggtcctgcatttgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttacgac |
230 |
Q |
| |
|
||||||||| ||| | |||| ||||||||||||| | || ||||||||||| | || ||| |||||||| |||||| |||||| ||| | |||| || |
|
|
| T |
10343372 |
atttgagacagagtagtagtactatttggtcctgcgcctacatcaacaacttcatttattatgcgttggttcaacatagttgaaataacattattaccac |
10343471 |
T |
|
| Q |
231 |
tattgttccgccattatgttgatgaaat---tgaagacatgttgttgacatc |
279 |
Q |
| |
|
||||||| | |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
10343472 |
tattgttacaccatgatgttgatgaaatcaaaaaagacatgttgttgacatc |
10343523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 10181533 - 10181581
Alignment:
| Q |
171 |
cagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgac |
219 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
10181533 |
cagcaacaacttcattcatcatgtgttggtttaacatagttgaaatgac |
10181581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 10343205 - 10343309
Alignment:
| Q |
18 |
ttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaaccaacccataataaatgaagttgttgatgtaggcgcaggacca |
117 |
Q |
| |
|
||||| ||||| ||| || |||||||||||||| | ||| |||||| |||||| |||||||| ||| || | ||||||||||| || | | ||| ||||| |
|
|
| T |
10343205 |
ttcattaacataatgatggaacaatagtggtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcatgtgcaagacca |
10343304 |
T |
|
| Q |
118 |
agtag |
122 |
Q |
| |
|
||||| |
|
|
| T |
10343305 |
agtag |
10343309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University