View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14131_low_2 (Length: 783)
Name: NF14131_low_2
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14131_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 326 - 773
Target Start/End: Original strand, 52203686 - 52204133
Alignment:
| Q |
326 |
atataaagtataataagtaacacttatattccctatcatattaaggtacaatctgaacagaacagaaccgcattgttatgtttctgttcaccgtaattta |
425 |
Q |
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| T |
52203686 |
atataaagtataataagtaacacttatattccctatcatattaaggtacaatctgaacagaacagaaccgcattgttatgtttctgttcaccgtaattta |
52203785 |
T |
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| Q |
426 |
gagaagtatttgttacatcttcacattcaaatttgttgtccattctttgtttgagagatcatttgataaaatctttttgcattgttatgttttcattcac |
525 |
Q |
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| T |
52203786 |
gagaagtatttgttacatcttcacattcaaatttgctgtccattctttgtttgagagatcatttgataaaatctttttgcattgttatgttttcattcac |
52203885 |
T |
|
| Q |
526 |
cgtaatttatagactaagttgctatagcagaacgtactgatgcgatgtgcattctctaatttagaaatcgtaggattcattgactgatgatgatttgctg |
625 |
Q |
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| T |
52203886 |
tgtaatttatagactaagttgctatagcagaacgtactaatgcgatgtgcattctctaatttagaaatcgtaggattcattgaccgatgatgatttgctt |
52203985 |
T |
|
| Q |
626 |
aagacaaaatgcatgacaattgaagatttgattgaggcgaatgatgtaagtatcagtttatgatctaattaagtcactcctctaattgtttgtatcatag |
725 |
Q |
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| T |
52203986 |
aagacaaaatgcatgacaattgaagatttgattgaggcgaatgatgaaagtatcactttatgatctaattaagtcactcctctaattgtttgtatcatag |
52204085 |
T |
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| Q |
726 |
ttataacgcaatcattttgatttgcaggagtgtcttggatctgtgctc |
773 |
Q |
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| T |
52204086 |
ttataacgcaatcattttgatttgcaggcgtgtcttggatctgtgctc |
52204133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 52203372 - 52203662
Alignment:
| Q |
16 |
caaatattaaatggctataaatactatgattacattagtcttttgattaggttgtgatgaatggaacaaactcaaccaatacatgattcaaaagttttcc |
115 |
Q |
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| T |
52203372 |
caaatattaaatggcaataaatactatgattacattagtcttttgattaggttgtgatgaatggaacaaactcaaccaatacatgattcaaaagtttttc |
52203471 |
T |
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| Q |
116 |
attatgcttttgatggtgtgaatggtgccaagaaaattttatttattagatataaattgttggcttgcattacaaagggtaaaccgcaaaaaggttataa |
215 |
Q |
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| T |
52203472 |
attatgcttttgatggtgtgaatggtgccaagaaaattttatttattagatataaattgttggcttgcattacaaagggtaaaccgcaaaaaggttataa |
52203571 |
T |
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| Q |
216 |
aattagaatccaattgttgactttttaatcaacagaacaattttccaaaagcaacacttgcagttagtactaacataatgtaaaatgtaac |
306 |
Q |
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| T |
52203572 |
aattagaatccaattgttgactttttaatcaacagaacaattttccaaaagcaacacttgcagttagtactaacataatgtaaaatgtaac |
52203662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 395 - 773
Target Start/End: Original strand, 34307715 - 34308093
Alignment:
| Q |
395 |
gcattgttatgtttctgttcaccgtaatttagagaagtatttgttacatcttcacattcaaatttgttgtccattctttgtttgagagatcatttgataa |
494 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||| | ||| ||| ||| ||||| | | |||||||||||| ||| |||||||||||| |
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| T |
34307715 |
gcattgttatgtttctgttcaccataatttagagaagtagttgtaaaatcagcacgttctcatttgctttacattctttgtttcagaaatcatttgataa |
34307814 |
T |
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| Q |
495 |
aat-ctttttgcattgttatgttttcattcaccgtaatttatagactaagttgctatagcagaacgtactgatgcgatgtgcattctctaatttagaaat |
593 |
Q |
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||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||| |
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| T |
34307815 |
aattcttattgcattgttatgttttcatttaccgtaatttatagactaagttgctatagcagcacatactaatgcgatgtgcattctctgatttagaaat |
34307914 |
T |
|
| Q |
594 |
cgtaggattcattgactgatgatgatttgctgaagacaaaatgcatgacaattgaagatttgattgaggcgaatgatgtaagtatcagtttatgatctaa |
693 |
Q |
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| |||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
34307915 |
cataggattcattgac---cgatgatttgttgaagacaaaacacatgacaattgaagatttgattaaggcgaatgatgcaagtatcagtttatgatctaa |
34308011 |
T |
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| Q |
694 |
tt--aagtcactcctctaattgtttgtatcatagttataacgcaatcattttgatttgcaggagtgtcttggatctgtgctc |
773 |
Q |
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| T |
34308012 |
ttagaagtcactcctctaattgtttgtatcatagttataacgcaatcattttggtttgcaggcatgtcttggatctgtgctc |
34308093 |
T |
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