View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14131_low_21 (Length: 226)

Name: NF14131_low_21
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14131_low_21
NF14131_low_21
[»] chr5 (6 HSPs)
chr5 (18-209)||(35374770-35374961)
chr5 (30-156)||(35405001-35405127)
chr5 (30-153)||(35365283-35365406)
chr5 (32-156)||(35753234-35753358)
chr5 (106-156)||(35422085-35422135)
chr5 (106-156)||(35435430-35435480)
[»] chr8 (1 HSPs)
chr8 (57-206)||(13563732-13563881)
[»] chr1 (2 HSPs)
chr1 (57-153)||(10411641-10411737)
chr1 (30-153)||(10417334-10417457)
[»] chr2 (4 HSPs)
chr2 (30-153)||(30633713-30633836)
chr2 (66-153)||(30631418-30631505)
chr2 (30-153)||(30661442-30661565)
chr2 (30-153)||(30670122-30670245)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 35374961 - 35374770
Alignment:
Q  18 gaatgctataatattgggaaaaacaagattcagatgtgttggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcg 117  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||||  |||| |||||    |||| |||||||||||||||||||||||||| |    
T  35374961 gaatgctataagattgggaaaaacaagattcagattggttggaagactaccggataagttgtttaacccaagatcaaaaacttgaatatttgataggttg 35374862  T
Q  118 taaagagaatgaggaatttcacctgacaaattatttgaatatataatcaacattttcaaaattgacaacatacctaaagaataaggtattct 209  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  35374861 taaagagaatgaggaatttcacctgacaaattatttgaatgtagaatcaacattttcaaacttgacaacatacccaaagaacaaggtattct 35374770  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 35405127 - 35405001
Alignment:
Q  30 attgggaaaaacaagattcagatgtgttggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatga 129  Q
    |||||||||  ||||||| | || ||| ||||||| |||||||||||||||  |  ||| |||||||| ||||||||||||||||| |||||||||||||    
T  35405127 attgggaaatgcaagatttaaatttgtaggaagaccaccaaataacttgtttcccgcaagatcaaaaatttgaatatttgataggttgtaaagagaatga 35405028  T
Q  130 ggaatttcacctgacaaattatttgaa 156  Q
    || ||||||||||||||||||||||||    
T  35405027 gggatttcacctgacaaattatttgaa 35405001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 35365406 - 35365283
Alignment:
Q  30 attgggaaaaacaagattcagatgtgttggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatga 129  Q
    |||||||||||||||||||| || || |||||||||||| ||||| |||||  | |||| |||||||  ||  ||||||||||||| |||||| ||||||    
T  35365406 attgggaaaaacaagattcatatttgatggaagactaccgaataagttgtttaccccaagatcaaaagatttcatatttgataggttgtaaagtgaatga 35365307  T
Q  130 ggaatttcacctgacaaattattt 153  Q
    ||||||||||||||||||||||||    
T  35365306 ggaatttcacctgacaaattattt 35365283  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 35753358 - 35753234
Alignment:
Q  32 tgggaaaaacaagattcagatgtgttggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatgagg 131  Q
    |||||||||||||||||| || || |||||||| |||||| || | |||  || | | | ||| |  ||||||||| ||||| | |||||||||||||||    
T  35753358 tgggaaaaacaagattcatatttgatggaagacgaccaaacaattggtttcctgcgagaacaagatattgaatattggatagattgtaaagagaatgagg 35753259  T
Q  132 aatttcacctgacaaattatttgaa 156  Q
    ||||||||||||||||| |||||||    
T  35753258 aatttcacctgacaaatgatttgaa 35753234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 35422135 - 35422085
Alignment:
Q  106 tttgataggtcgtaaagagaatgaggaatttcacctgacaaattatttgaa 156  Q
    |||||||| | ||||||||||||||| |||||||| || ||||||||||||    
T  35422135 tttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaa 35422085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 35435480 - 35435430
Alignment:
Q  106 tttgataggtcgtaaagagaatgaggaatttcacctgacaaattatttgaa 156  Q
    |||||||| | ||||||||||||||| |||||||| || ||||||||||||    
T  35435480 tttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaa 35435430  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 13563881 - 13563732
Alignment:
Q  57 tggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatgaggaatttcacctgacaaattatttgaa 156  Q
    |||||||||||| |||||||||||  | |||| ||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  13563881 tggaagactaccgaataacttgttccccccaagatctaaaatttgaatatttcataggttgtaaagagaatgaggaatttcacctgacaaattatttgaa 13563782  T
Q  157 tatataatcaacattttcaaaattgacaacatacctaaagaataaggtat 206  Q
      |  | |||| |  |||||  |||||||| |||| ||||||||||||||    
T  13563781 cctggattcaatagcttcaagcttgacaacctacccaaagaataaggtat 13563732  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 10411641 - 10411737
Alignment:
Q  57 tggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatgaggaatttcacctgacaaattattt 153  Q
    ||||| |||||||||||||||||| |||||  ||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  10411641 tggaatactaccaaataacttgttttctccggtatcaaaaagttgaatatttgataggttgtagagagaatgagggatttcacctgacaaattattt 10411737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 10417334 - 10417457
Alignment:
Q  30 attgggaaaaacaagattcagatgtgttggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatga 129  Q
    |||||||||| ||||||  || | |||| ||||||||||||||||| ||||     ||| |||||||| |||||||||||||||||  ||||||||| ||    
T  10417334 attgggaaaagcaagatgaaggtttgtttgaagactaccaaataacatgtttgaagcaagatcaaaaatttgaatatttgataggttataaagagaacga 10417433  T
Q  130 ggaatttcacctgacaaattattt 153  Q
    || |||||||||||  ||||||||    
T  10417434 gggatttcacctgaacaattattt 10417457  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 30633836 - 30633713
Alignment:
Q  30 attgggaaaaacaagattcagatgtgttggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatga 129  Q
    |||||||||||| ||||  | || || ||||| ||||||||||||||||||  ||||||||  ||||  ||||||||||||||||| ||| |||||||||    
T  30633836 attgggaaaaacgagatctatatttgatggaatactaccaaataacttgtttgctccaatagaaaaattttgaatatttgataggttgtagagagaatga 30633737  T
Q  130 ggaatttcacctgacaaattattt 153  Q
    || |||||||||||||||||||||    
T  30633736 gggatttcacctgacaaattattt 30633713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 30631505 - 30631418
Alignment:
Q  66 accaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatgaggaatttcacctgacaaattattt 153  Q
    ||||||||| |||||  |||||||| |||||| ||||||||||||||||| | | ||||||||||| |||||||||||||||||||||    
T  30631505 accaaataaattgtttactccaatagcaaaaatttgaatatttgataggttgcagagagaatgagggatttcacctgacaaattattt 30631418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 30661565 - 30661442
Alignment:
Q  30 attgggaaaaacaagattcagatgtgttggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatga 129  Q
    |||||||||||| ||||  | || || ||||| |||||||||||| |||||  ||  ||||  ||||| ||||||||||||||||| ||| |||||||||    
T  30661565 attgggaaaaactagatctatatttgatggaatactaccaaataaattgtttcctgaaatagaaaaaatttgaatatttgataggttgtagagagaatga 30661466  T
Q  130 ggaatttcacctgacaaattattt 153  Q
    || |||||||||||||||||||||    
T  30661465 gggatttcacctgacaaattattt 30661442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 30670245 - 30670122
Alignment:
Q  30 attgggaaaaacaagattcagatgtgttggaagactaccaaataacttgttatctccaatatcaaaaacttgaatatttgataggtcgtaaagagaatga 129  Q
    |||||||||||| ||||  | || || | ||| ||||||||||||||||||     |||||  ||| | ||||||||||||||||| ||| |||||||||    
T  30670245 attgggaaaaacgagatctatatttgattgaatactaccaaataacttgtttgaatcaatagaaaacatttgaatatttgataggttgtagagagaatga 30670146  T
Q  130 ggaatttcacctgacaaattattt 153  Q
    || |||||||||||||||||||||    
T  30670145 gggatttcacctgacaaattattt 30670122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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